Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,109,062 | A→T | 7.7% | I104N (ATT→AAT) | PP_1881 ← | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,109,062 | 0 | A | T | 7.7% | 150.3 / 3.4 | 52 | I104N (ATT→AAT) | PP_1881 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (24/24); new base T (2/2); total (26/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 |
GTGAAACATATTGGTCGCCCTTGTGGTCGACCAGTTCGTAGCGAATCCACAGTTTGCCATTGCGTGGAATGGACGCCTGGGGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGGGATCTCGACGGTCAGGTCGGTTTTCAGGCGGTCTTTGTGCAGCGTGC > NC_002947/2108916‑2109209 | gtgAAACATATTGGTCGCCCTTGTGGTCGACCAGTTCGTAGCGAATCCACAGTTTGCCATTGCGTGGAATGGACGCCTGGGGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATgg < 1:1220218/150‑1 (MQ=255) gAAACATATTGGTCGCCCTTGTGGTCGACCAGTTCGTAGCGAATCCACAGTTTGCCATTGCGTGGAATGGACGCCTGGGGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGcc < 1:490659/150‑1 (MQ=255) cATATTGGTCGCCCTTGTGGTCGACCAGTTCGTAGCGAATCCACAGTTTGCCATTGCGTGGAATGGACGCCTGGGGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCATTGGCCCTgt < 1:636225/150‑2 (MQ=255) tatTGGTCGCCCTTGTGGTCGACCAGTTCGTAGCGAATCCACAGTTTGCCATTGAGTGGAATGGACGCCTGGGGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAg > 2:369489/1‑150 (MQ=255) gCCCTTGTGGTCGACCAGTTCGTAGCGAATCCACAGTTTGCCATTGCGTGGAATGGACGCCTGGGGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTc > 2:256875/1‑150 (MQ=255) aCCAGTTCGTAGCGAATCCACAGTTTGCCATTGCGTGGAATGGACGCCTGGGGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAg < 2:152856/150‑1 (MQ=255) aCCAGTTCGTAGCGAATCCACAGTTTGCCATTGCGTGGAATGGACGCCTGGGGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAg > 1:248328/1‑150 (MQ=255) gTTCGTAGCGAATCCACAGTTTGCCATTGCGTGGAATGGACGCCTGGGGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGa > 1:861691/1‑150 (MQ=255) gCGAATCCACAGTTTGCCATTGCGTGGCATGGACGGCTGGTGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAg < 1:1247833/150‑1 (MQ=255) tCCACAGTTTGCCATTGCGTGGAATGGACGCCTGGGGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTa > 1:658616/1‑150 (MQ=255) acaGTTTGCCATTGCGTGGAATGGACGCCTGGGGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCATTGGCCCTgt < 1:624746/108‑2 (MQ=255) acaGTTTGCCATTGCGTGGAATGGACGCCTGGGGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCATTGGCCCTgt > 2:624746/1‑107 (MQ=255) gCCATTGCGTGGAATGGACGCCTGGGGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGagta < 2:658616/150‑1 (MQ=255) ggAATGGACGCCTGGGGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGa < 1:256875/150‑1 (MQ=255) gAATGGACGCCTGGGGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGAt < 2:1068402/150‑1 (MQ=255) tGGACGCCTGGGGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATctg < 1:369489/150‑3 (MQ=255) tGGGGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGt > 1:599939/1‑150 (MQ=255) gAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCa > 1:26268/1‑150 (MQ=255) gAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCACTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCa < 2:567331/150‑1 (MQ=255) ccAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCgg > 1:237204/1‑81 (MQ=255) ccAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCgg < 2:237204/81‑1 (MQ=255) aGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGAc > 1:508653/1‑150 (MQ=255) gCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCAt < 2:26268/150‑1 (MQ=255) cTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATg > 1:899333/1‑150 (MQ=255) tAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGc > 1:1233587/1‑150 (MQ=255) aaCGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAg > 1:1153986/1‑137 (MQ=255) aaCGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAg < 2:1153986/137‑1 (MQ=255) gAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAg < 1:1151723/133‑1 (MQ=255) gAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAg > 2:1151723/1‑133 (MQ=255) gAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCggg > 1:798116/1‑148 (MQ=255) gAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCggg < 2:798116/148‑1 (MQ=255) gAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGGGa > 1:71961/1‑150 (MQ=255) gAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCAACAGGGCCAATGGCCGTGAAGGTGTTTTCGGCGACCGTTAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGGGa < 1:726501/150‑1 (MQ=255) aaaGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGGGAt < 2:861691/150‑1 (MQ=255) tcCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGGGATCTCGAc < 1:106518/150‑1 (MQ=255) cACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGCCAGGTCAGACCATGCGGGGATCTCGACGGTCAg > 1:232235/1‑150 (MQ=255) aCGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGGGATCTCGACGGTCAgg < 2:71961/150‑1 (MQ=255) gAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGGGATCTCGACGGTCAGGTc > 1:1069524/1‑150 (MQ=255) gggAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGGGATCTCGACGGTCAGGTCGGTTTTc < 2:899333/150‑1 (MQ=255) aCTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGGGATCTCGACGGTCAGGTCGGTTTTCAGGCggg > 1:115868/1‑149 (MQ=255) ttttCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGGGGTCACGACGTTCAGGTCTGTTTTCATGCGGGCt > 2:391300/1‑150 (MQ=255) tCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCAGACGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGGGATCTCGACGGTCAGGTCGGTTTTCAGGCGGTCTTtg < 1:391300/150‑1 (MQ=255) cttcAGGGCCATTGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGGGATCTCGACGGTCAGGTCGGTTTTCAGGCGGTCTTtgt > 2:1230149/4‑150 (MQ=255) ggCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGGGATCTCGACGGTCAGGTCGGt < 1:84443/127‑1 (MQ=255) ggCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGGGATCTCGACGGTCAGGTCGGt > 2:84443/1‑127 (MQ=255) gCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGCGATCTCGACGGTCAGGTCGGTTTTCAGGCGGTCTTTGTGCAGCGt < 2:248328/150‑1 (MQ=255) gCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCATTGGGGCAGTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGGGATCTCGACGGTCAGGTCGGTTTTCAGGCGGTCTTTGTGCAGCGt > 2:1138980/1‑150 (MQ=255) gCCAATGGACCTAAAGGTGTTTTCGGCGCCAGTAAAGGTGAACTGCAGTTGTAACGTCGACGAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGGGATCTCGACGGTCAGGTCGGTTTTCAGGCGGTCTTTGTGCAGCGt < 2:132633/150‑1 (MQ=255) cAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCggg > 2:307361/1‑103 (MQ=255) cAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCggg < 1:307361/103‑1 (MQ=255) cAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGGGATCTCGACGGTCAGGTCGGTTTTCAGGCGGTCTTTGTGCAGCGTGc > 1:697213/1‑150 (MQ=255) cAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGAACAAGGCGCGATCTCGACGGTCAGGTCGGTTTTCAGGCGGTCTTTGTGCAGCGTGc > 2:358366/1‑150 (MQ=255) | GTGAAACATATTGGTCGCCCTTGTGGTCGACCAGTTCGTAGCGAATCCACAGTTTGCCATTGCGTGGAATGGACGCCTGGGGAAAAGCCAGTGCTAACGGAAAGTCTCCTGGCACGAGGGGCGGGAGAAACTTTTCGACAGGGCCAATGGCCCTGAAGGTGTTTTCGGCGCCAGTCAAGGTGAACTGCAGTTGTAACGTCGAGTAGTCATTTGGATCACTGCCCGGTGGCAGGTCAGACCATGCGGGGATCTCGACGGTCAGGTCGGTTTTCAGGCGGTCTTTGTGCAGCGTGC > NC_002947/2108916‑2109209 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |