Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,479,566 | C→A | 7.8% | S180I (AGC→ATC) | PP_2173 ← | AraC family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,479,566 | 0 | C | A | 7.8% | 158.5 / 2.2 | 51 | S180I (AGC→ATC) | PP_2173 | AraC family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base C (25/22); new base A (2/2); total (27/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.68e-01 |
ACAGCGCCCCGCCGGTATAACCCGTTCATGCACGCCGAAATCGTTGGGCTGCACTGCCTCGTCTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGAGCGCGGCCACGTGGGTTTCGGCGAAATTCACGATACGGATCTGCATGGTGATACTCCTG > NC_002947/2479421‑2479715 | acaGCGCCCCGCCGGTATAACCCGTTCATGCACGCCGAAAACGTTGGGCTGCACTGCCTCGTCTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGc > 2:686239/1‑150 (MQ=255) cgcCCCGCCGGTATAACCCGTTCATGCACGCCGAAATCGTTGGGCTGCACTGCCTCGTCTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGAAGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCcaca < 1:733544/150‑1 (MQ=255) gcCCCGCCGGTATAACCCGTTCATGCACGCCGAAATCGTTGGGCTGCACTGCCTCGTCTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAg < 2:58802/150‑1 (MQ=255) gcgggTATAACCCGTTCATGCACGCCGAAATCGTTGGGCTGCACTGCCTCGTCTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGAc > 1:1284175/4‑150 (MQ=255) gTATAACCCGTTCATGCACGCCGAAATCGTTGGGCTGCACTGCCTCGTCTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGATGGCCACAGGCGACTGGc > 1:21518/1‑150 (MQ=255) gTATAACCCGTTCATGCACGCCGAAATCGTTGGGCTGCACTGCCTCGTCTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGATGGCCACAGGCGACTGGc > 1:663632/1‑150 (MQ=255) aaCCCGTTCATGCACGCCGAAATCGTTGGGCTGCACTGCCTCGTCTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCt < 1:471234/150‑1 (MQ=255) aCCCGTTCATGCACGCCGAAATCGTTGGGCTGCACTGCCTCGTCTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCtg > 1:310673/1‑150 (MQ=255) cccGTTCATGCACGCCGAAATCGTTGGGCTGCACTGCCTCGTCTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCg < 2:963224/146‑1 (MQ=255) cccGTTCATGCACGCCGAAATCGTTGGGCTGCACTGCCTCGTCTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCg > 1:963224/1‑146 (MQ=255) ccGTTCATGCACGCCGAAATCGTTGGGATGGACTGCCTCGTCTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCtgtg > 1:874580/1‑150 (MQ=255) gCCGAAATCGTTGGGCTGCACTGCCTCGTCTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTg > 2:933418/1‑150 (MQ=255) gAAATCGTTGGGCTGCACTGCCTCGTCTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCg > 1:1037536/1‑150 (MQ=255) gCTGCACTGCCTCGTCTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGa > 2:981141/1‑150 (MQ=255) gCTGCACTGCCTCGTCTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGGTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGa > 2:156749/1‑150 (MQ=255) gCACTGCCTCGTCTATCTCTTTGAAGACGCCAAAGCGAAAGGGGTGGGCCCGGGTGGTGTCGGGGTTGTCGTACGGGATACCGAAGGGACGGGTGCTGGCCACAGGCGACTGGCCGCTGTGCAGGCGCCATTGGCGAAAACGCGcgccgc < 2:1083155/150‑1 (MQ=255) gCACTGCCTCGTCTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGAcca < 1:686239/150‑3 (MQ=255) cTCGTATATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTGGTCGTAGTGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCAGCTGTGCATGCGCCATTGGCGAAAACGGGCGACGCTTTCGCt < 2:347740/150‑1 (MQ=255) cTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCa > 1:613718/1‑150 (MQ=255) tctcGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGc > 1:164533/1‑150 (MQ=255) gccgcACACTGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCggg > 1:1006988/1‑150 (MQ=255) acacGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGcc > 2:83176/1‑150 (MQ=255) acacGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGcc > 1:373058/1‑150 (MQ=255) ggCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTg < 2:64826/150‑1 (MQ=255) cAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGTGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCtgt < 1:553989/90‑1 (MQ=255) cAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCtgt > 2:553989/1‑90 (MQ=255) cAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTg < 1:115584/148‑1 (MQ=255) cAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTg > 2:115584/1‑148 (MQ=255) cAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGgt < 2:1207777/150‑1 (MQ=255) aaaGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGgtg > 2:385200/1‑150 (MQ=255) gCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTc < 2:1006988/150‑1 (MQ=255) gAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGa < 1:385200/150‑1 (MQ=255) gAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGa < 1:742053/150‑1 (MQ=255) aaaGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCggg < 1:404155/132‑1 (MQ=255) aaaGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCggg > 2:404155/1‑132 (MQ=255) tGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGAGCGCGGcc > 2:127489/1‑150 (MQ=255) ggggTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGATGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGAGCGCGGCCACGTgg < 2:21518/150‑1 (MQ=255) ggggTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGATGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGAGCGCGGCCACGTgg < 2:663632/150‑1 (MQ=255) gTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGAGCGCGGCCACGTGGGTTTCGGCGAAAtt < 1:83176/150‑1 (MQ=255) gTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGTTTTCTGCGTGCTTACCAGGCCGGGCGGCCCTTGGTGTTCGAGCGCCGCCACGTGGGTTTCGGCGAAATTCAc > 1:223103/1‑150 (MQ=255) tCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGAGCGCGGCCACGTGGGTTTCGGCGAAATTCACg > 1:621190/1‑150 (MQ=255) ggATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCAGGGCGGTCCTTGGTGTTCGAGCGGGGTGACGTGGGTTTCGGCGAAATTCACGATACGGa > 2:621913/1‑150 (MQ=255) gATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGAGCGCGGCCACGTGGGTTTCGGCGAAATTCACGATACGGAt > 2:187343/1‑150 (MQ=255) aTACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGAGCGCGGCCACGTGGGTTTCGGCGAAATTCACGATACGGATc < 1:1211933/150‑1 (MQ=255) cGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGAGCGCGGCCACGTGGGTTTCGGCGAAATTCACGATACGGATCTGCa > 1:1051848/1‑150 (MQ=255) aGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGAGCGCGGCCACGTGGGTTTCGGCGaaa > 1:476448/1‑128 (MQ=255) aGGTACGGCCGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGAGCGCGGCCACGTGGGTTTCGGCGaaa < 2:476448/128‑1 (MQ=255) ggTCCGGCGGCTGCCCACAGGCGACTGGCCGCGGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGAGCGCGGCCACGTGGGTTTCGGCGAAATTCACGATACGGATCTGCATGGt < 2:1037536/150‑1 (MQ=255) ggTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGAGCGCGGCCACGTGGGTTTCGGCGAAATTCACGATACGGATCTGCATGGt < 1:933418/150‑1 (MQ=255) gTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGAGCGCGGCCACGTGGGTTTCGGCGAAATTCACGATACGGATCTGCATGGTg < 1:981141/150‑1 (MQ=255) tACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGAGCGCGGCCACGTGGGTTTCGGCGAAATTCACGATACGGATCTGCATGGTGa < 1:1155217/150‑1 (MQ=255) ctgGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGAGAGACGCGTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGAGCGCGGCCACGTGGGTTTCGGCGAAATTCACGATACGGATCTGCATGGTGATACTCCTg < 2:874580/150‑1 (MQ=255) | ACAGCGCCCCGCCGGTATAACCCGTTCATGCACGCCGAAATCGTTGGGCTGCACTGCCTCGTCTATCTCGCCGCACACGGCAAAGCGAAAGGCGTGGGCCGGGGTGGTGTCGGGGTTGTCGTAGGGGATACCGAAGGTACGGCTGCTGGCCACAGGCGACTGGCCGCTGTGCATGCGCCATTGGCGAAAACGCGCGACGCTTTCGCTGACCAGGCCGGGCGGCCCTTGGTGTTCGAGCGCGGCCACGTGGGTTTCGGCGAAATTCACGATACGGATCTGCATGGTGATACTCCTG > NC_002947/2479421‑2479715 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |