Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,742,960 | C→T | 9.8% | H5Y (CAC→TAC) ‡ | PP_2397 → | EF hand domain‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,742,960 | 0 | C | T | 9.8% | 137.4 / 5.7 | 51 | H5Y (CAC→TAC) ‡ | PP_2397 | EF hand domain‑containing protein |
Reads supporting (aligned to +/- strand): ref base C (25/21); new base T (2/3); total (27/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.56e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.53e-01 |
AAAAGGCGGTGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACTTTCCAACCCCAGTGGAGCT > NC_002947/2742823‑2743107 | aaaaGGCGGTGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGccc < 1:1153508/150‑1 (MQ=255) gCGGTGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGTACCTTGGGGCCCGTTGc < 1:785799/150‑1 (MQ=255) gCGGTGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGc > 1:196993/1‑150 (MQ=255) ggTGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCg > 1:705042/1‑150 (MQ=255) tGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCggg < 2:1128611/150‑1 (MQ=255) ggcggcACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGggt < 2:568157/150‑1 (MQ=255) aCCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGgtgtg > 2:573749/1‑150 (MQ=255) ccGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTggg > 1:1184237/1‑128 (MQ=255) ccGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTggg < 2:1184237/128‑1 (MQ=255) ccGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGgtgtgt < 2:147452/143‑1 (MQ=255) ccGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGgtgtgt > 1:147452/1‑143 (MQ=255) tAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGt > 1:1018976/1‑150 (MQ=255) gcggcgGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTAt < 2:839708/150‑1 (MQ=255) ggcggcCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCt < 1:1273258/150‑1 (MQ=255) gcggcCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTg > 2:451145/1‑150 (MQ=255) cccGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGc > 1:1056989/1‑111 (MQ=255) cccGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGc < 2:1056989/111‑1 (MQ=255) aGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGTACTGTATCTGCCTGTGCTGCa > 1:122197/1‑150 (MQ=255) aGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCa < 1:540364/150‑1 (MQ=255) ccAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGa > 2:474159/1‑150 (MQ=255) cAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGAc < 1:1222894/150‑1 (MQ=255) gAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTAc > 2:862321/1‑150 (MQ=255) aCAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATa < 2:1018976/150‑1 (MQ=255) ccGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCCGCAGTACTGCCATACAAAAgcg > 1:390187/1‑150 (MQ=255) ccAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGcc > 1:745921/1‑150 (MQ=255) aaGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTg > 1:551241/1‑150 (MQ=255) cccGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCa > 1:341958/1‑150 (MQ=255) ccGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACaaaa < 1:368221/137‑1 (MQ=255) ccGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACaaaa > 2:368221/1‑137 (MQ=255) gCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGa > 1:861423/1‑150 (MQ=255) gCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGa < 2:705042/150‑1 (MQ=255) ccAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGAt < 2:341958/150‑1 (MQ=255) cGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAAc < 1:451145/150‑1 (MQ=255) aaCCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGggtg < 1:44841/62‑1 (MQ=255) aaCCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGggtg > 2:44841/1‑62 (MQ=255) tGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTa > 2:972006/1‑150 (MQ=255) gAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAAt > 2:415150/1‑150 (MQ=255) gAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAAt > 2:370456/1‑150 (MQ=255) cTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTc < 2:196993/150‑1 (MQ=255) tGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTcc > 2:937626/1‑150 (MQ=255) aTCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCAc > 2:409530/1‑150 (MQ=255) aCGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACttt < 2:228302/150‑1 (MQ=255) cATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACTTTCCAAcc < 1:862321/150‑1 (MQ=255) tGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACTTTCCAAcccc > 1:890831/1‑150 (MQ=255) gggCCCCAAGGTGCCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACTTTcc < 2:810360/143‑1 (MQ=255) gggCCCCAAGGTGCCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACTTTcc > 1:810360/2‑144 (MQ=255) gCCCCAAGGTGCCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACTTTCCAAcccc > 2:1078158/1‑148 (MQ=255) gCCCCAAGGTGCCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACTTTCCAAcccc < 1:1078158/148‑1 (MQ=255) cAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACTTTCCAACCCCAGTGGa < 1:370456/150‑1 (MQ=255) aaGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACTTTCCAACCCCAGTGGAg > 2:940148/1‑150 (MQ=255) ggCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACTTTCCAACCCCAGTGGAGCt < 2:551241/150‑1 (MQ=255) | AAAAGGCGGTGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACTTTCCAACCCCAGTGGAGCT > NC_002947/2742823‑2743107 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |