Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 198,777 | T→A | 11.4% | L1428Q (CTG→CAG) | PP_0168 → | putative surface adhesion protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 198,777 | 0 | T | A | 11.4% | 119.3 / 7.5 | 44 | L1428Q (CTG→CAG) | PP_0168 | putative surface adhesion protein |
Reads supporting (aligned to +/- strand): ref base T (17/22); new base A (2/3); total (19/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.49e-01 |
CAGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGA > NC_002947/198631‑198915 | cAGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTgg < 1:754630/149‑1 (MQ=255) cAGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGt < 1:89140/150‑1 (MQ=255) cAGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATAGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTgg > 2:754630/1‑149 (MQ=255) aGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTc < 2:1246066/150‑1 (MQ=255) cACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGt < 1:263252/150‑1 (MQ=255) ccGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGa < 1:5867/150‑1 (MQ=255) ccGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGa > 2:60029/1‑150 (MQ=255) ccGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCAGGTCGTGa < 1:1189538/150‑1 (MQ=255) ccGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCAGGTCGTGa < 2:440606/150‑1 (MQ=255) tCACCGACGAGCCAGGTACGCCAGGAAACGACGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGa < 1:398180/150‑1 (MQ=255) cgacgaGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGcaa > 2:918167/1‑150 (MQ=255) cgacgaGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGcaa > 1:1124738/1‑150 (MQ=255) ggTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAg > 1:488586/1‑150 (MQ=255) aCGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTc < 1:110263/150‑1 (MQ=255) gCCAGGCAACGAAGGCACAAGCGGCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCAc < 1:1029930/150‑1 (MQ=17) cAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTAAGGTCACCa > 2:1186790/1‑150 (MQ=255) ggCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATc < 2:591533/150‑1 (MQ=255) ggCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATc < 1:918167/150‑1 (MQ=255) aaCGAAGGCGATATCGTCAAGGTCACCATCACGGGCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAg < 1:447725/150‑1 (MQ=255) aaCGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAg < 2:1124738/150‑1 (MQ=255) aaCGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAg < 1:279889/150‑1 (MQ=255) cGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGc < 1:60029/150‑1 (MQ=255) atatCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGaaa < 1:240095/150‑1 (MQ=255) tCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCa < 2:893431/150‑1 (MQ=255) tCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCCCGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCa < 2:1041530/147‑1 (MQ=255) tCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTAACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCa > 1:1041530/1‑147 (MQ=255) cACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCa < 2:1081373/150‑1 (MQ=255) ttCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGa > 1:316081/1‑150 (MQ=255) ggTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGa > 1:759637/1‑150 (MQ=255) agaACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATc > 2:231532/1‑150 (MQ=255) gaACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCa < 2:789909/150‑1 (MQ=255) gTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGAt > 2:927098/1‑150 (MQ=255) aaCCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACTACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCgg < 1:68111/150‑1 (MQ=255) cTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGAt < 1:231532/150‑1 (MQ=255) tgtgCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGACGGCGTAACGAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCt > 1:477216/1‑150 (MQ=255) acaTCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCa > 1:828307/1‑150 (MQ=255) atgaaCACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATc > 1:1282491/4‑150 (MQ=255) aTCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATc > 1:653461/1‑150 (MQ=255) acCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTcg > 1:736322/1‑150 (MQ=255) agggtCACGACCAGGTCGTGAGCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCgg > 2:262787/5‑117 (MQ=14) agggtCACGACCAGGTCGTGAGCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCgg < 1:262787/113‑1 (MQ=14) gggtCACGACCAGGTCGTAACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGa > 2:1198698/4‑150 (MQ=255) cGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGTg > 1:929732/1‑142 (MQ=255) cGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGTg < 2:929732/142‑1 (MQ=255) | CAGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGA > NC_002947/198631‑198915 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |