| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,632,641 | G→C | 12.1% | noncoding (35/76 nt) | PP_t59 ← | tRNA‑Gly |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,632,641 | 0 | G | C | 12.1% | 95.5 / 6.1 | 33 | noncoding (35/76 nt) | PP_t59 | tRNA‑Gly |
| Reads supporting (aligned to +/- strand): ref base G (14/15); new base C (2/2); total (16/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.11e-01 | |||||||||||
TAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCCTTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGCGTCAACCCCTTGATTCAAAAAACTTTTATTTTTTTTCCGAGCCTTCGCGCAGGTGCGGCCAGGCGGCCAGCAGGTA > NC_002947/4632495‑4632789 | tAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCCTTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGCCaa > 1:434881/1‑150 (MQ=255)tAGAGGGCGGGGTATTGAGGCAGAATACATTCGAACGAAAAAAGGCCCCGAAGGGCCTTTCTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCaa < 2:1268630/150‑1 (MQ=255) gagGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCCTTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAgg > 2:844370/1‑150 (MQ=255) ggCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCCTTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGCCAAGGTCg < 2:434881/150‑1 (MQ=255) aTTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCCTTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTAc < 1:879825/150‑1 (MQ=255) cAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCCTTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGa < 1:844370/150‑1 (MQ=255) cccGAAGGGCC‑TTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCa > 2:292415/1‑150 (MQ=255) aaGGGCCTTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATGTGGAGCGGGAAACGAGACTCGAACTCGCGTCCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTc < 1:143866/150‑1 (MQ=255) cAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTaa > 1:739998/1‑150 (MQ=255) aaCGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTaaa > 1:95775/1‑150 (MQ=255) aaCGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTaaa > 1:574641/1‑150 (MQ=255) cTTACCGACTGCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGATTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGc < 2:325489/150‑1 (MQ=255) aCAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTa < 1:564676/130‑1 (MQ=255) aCAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTa > 2:564676/1‑130 (MQ=255) cAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCAACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGCGTCa > 2:1058066/1‑150 (MQ=255) aaaCCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGCGTCAACCCCTTGATTCa > 2:659555/1‑150 (MQ=255) tGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGCGTCAACCCCTTGATTCaaaaaa < 1:721550/150‑1 (MQ=255) tGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGCGTCAACCCCTTGATTCaaaaaa < 2:847699/150‑1 (MQ=255) tttGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGCGACAACCCCTTGATTCAAAAAACTTTTAtttttt > 1:785608/1‑150 (MQ=255) gCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATggg > 1:1190739/1‑83 (MQ=255) gCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATggg < 2:1190739/83‑1 (MQ=255) cGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGCGTCAACCCCTTGATTCAAAAAACTTTTATTTTTTTTCCGAGCCTTcgc < 2:1061943/150‑1 (MQ=255) tCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTACCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGCGTCAACCCCTTGATTCAAAAAACTTTTATTTTTTTTCCGAGCCTTCGCGCAggg > 1:231845/1‑149 (MQ=255) gAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCACGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGCGTCAACCCCTTGATTCAAAAAACTTTTATTTTTTTTCCTAGTCTTCGCGCAGGTgc > 2:126924/1‑150 (MQ=255) tCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGCGTCAACCCCTTGATTCAAAAAACTTTTATTTTTTTTCCGAGCCTTCGCGCAGGTgcggcc > 1:895896/1‑150 (MQ=255) gcgACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGCGTCAACCCCTTGATTCAAAAAACTTTTATTTTTTTTCCGAGCCTTCGCGCAGGTgcggccag < 1:659555/150‑1 (MQ=255) agcacGACCTTGCCAAGGTCGGGGTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGc > 2:158123/5‑85 (MQ=37) agcacGACCTTGCCAAGGTCGGGGTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGc < 1:158123/81‑1 (MQ=37) ccccGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGCGTCAACCCCTTGATTCAAAAAACTTTTATTTTTTTTCCGAGCCTTCGCGCAGGTgcggccaggcgg < 1:1058066/150‑1 (MQ=255) ccGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTCTTACCGCCTCGTCCTGCGCGCCATTCTAGCGATTTCTAAAATATCGTCAACCCCTTGATTCAAAAAACTTTTATTTTTTTTCCGAGCCTTCGCGCAGGTgcggccaggcggcc < 2:785608/150‑1 (MQ=38) cGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGCGTCAACCCCTTGATTCAAAAAACtttt < 2:417162/108‑1 (MQ=255) cGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGCGTCAACCCCTTGATTCAAAAAACtttt > 1:417162/1‑108 (MQ=255) aaCCTTGGCAAGGTCGTGCTCTACCTACTGATCTTTTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGCGTCAACTCCTTGATTCAAAACACTTTTATTTTTTTTCCGAGCCTTCGCGCAGGTgcggccaggcggccag < 2:95775/149‑1 (MQ=255) ggCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGCGTCAACCCCTTGATTCAAAAAACTTTTATTTTTTTTCCGAGCCTTCGCGCAGGTGCGGCCAGGCGGCCAGCAGGTa > 2:709976/1‑150 (MQ=255) | TAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCCTTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTCGTGATGGGTGCCATTCTAGCGATTTCTAAAACAGCGTCAACCCCTTGATTCAAAAAACTTTTATTTTTTTTCCGAGCCTTCGCGCAGGTGCGGCCAGGCGGCCAGCAGGTA > NC_002947/4632495‑4632789 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |