Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,740,530 | C→A | 12.0% | intergenic (+39/+32) | hutF → / ← PP_5037 | formiminoglutamate deiminase/lipocalin family lipoprotein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,740,530 | 0 | C | A | 12.0% | 137.9 / 7.4 | 50 | intergenic (+39/+32) | hutF/PP_5037 | formiminoglutamate deiminase/lipocalin family lipoprotein |
Reads supporting (aligned to +/- strand): ref base C (20/24); new base A (3/3); total (23/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.43e-01 |
TGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAGTGTCG > NC_002947/5740382‑5740677 | tGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGccc > 2:102311/1‑150 (MQ=255) gcgATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCcgcg > 2:1076703/1‑150 (MQ=255) gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGaa < 2:489106/150‑1 (MQ=255) gATGTGACGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGaa < 2:986896/150‑1 (MQ=255) gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGtt < 2:381008/150‑1 (MQ=255) gTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTgcaa > 2:1253185/1‑150 (MQ=255) tGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTgcaac < 2:1248480/150‑1 (MQ=255) tGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTgcaacgcaa > 2:702864/1‑150 (MQ=255) gCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAAccc > 2:950586/1‑150 (MQ=255) gCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAAccc < 2:646389/150‑1 (MQ=255) tggtgCGCCAGGGGCGGCATGCCCAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAAc > 1:1064065/1‑150 (MQ=255) tgCGCCAGGGGCGGCATGCCCAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGGGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCa < 2:349713/150‑1 (MQ=255) gcgcCAGGGGCGGCATGCCCAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAg < 1:1076703/150‑1 (MQ=255) gcgcCAGGGGCGGCATGCCCAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAg < 1:950586/150‑1 (MQ=255) cggcATGCCCAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTa < 1:237807/150‑1 (MQ=255) ggcATGGCCAGGAAGATTGAAGCCGGCCGGGGGTTTGCAAAGGTGTTCCGCAGCCTTTTGGGTTGAG‑GTACCCGGGGTGCCTTTCCACCCTTCCCCTGCCAAGCCCGCGAAGGTTTGAAACGCACCCCAAAAAAACTCAGTGCATTTTTa < 2:992974/150‑1 (MQ=255) cccAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTg > 1:1004067/1‑150 (MQ=255) ccAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGc > 1:596051/1‑150 (MQ=255) cAGGAAGA‑TGAAGGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTgcaa < 2:1070106/111‑1 (MQ=255) cAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTgcaa > 1:1070106/1‑111 (MQ=255) ggAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGa > 1:802086/1‑150 (MQ=255) tGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAggg > 1:73070/1‑97 (MQ=255) tGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAggg < 2:73070/97‑1 (MQ=255) tGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGAc < 2:802086/150‑1 (MQ=255) aaGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAATGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGAcgcc < 1:702864/150‑1 (MQ=255) aGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTACAGCCCTACGCGGG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTCCAAGTTGCTGATCGGAcgccc > 1:1030243/1‑150 (MQ=255) cgTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCaa < 1:102311/150‑1 (MQ=255) gTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAg > 1:688647/1‑150 (MQ=255) gTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAACCCTTCGCGGG‑CTTGCACGCGAAGGGCTgc < 1:869251/86‑1 (MQ=18) gTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAACCCTTCGCGGG‑CTTGCACGCGAAGGGCTgc > 2:869251/1‑86 (MQ=17) aaGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTgg < 2:928292/150‑1 (MQ=255) gcCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATAccc < 1:1253185/150‑1 (MQ=255) cAGCTTTTAGGATGAGCGTACCGGGGGGGCGTTGCAGCCGTTCCCGTC‑CAAGCCCGCGAATGGGGGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCct > 2:656210/1‑150 (MQ=255) aGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGTAAGTTCGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctg > 1:977591/1‑150 (MQ=255) ttttGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgctg > 2:577987/1‑150 (MQ=255) tttGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATGCCCCtgctgc < 1:495746/150‑1 (MQ=255) ttGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGcc < 2:1030243/150‑1 (MQ=255) tACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAca < 1:577987/150‑1 (MQ=255) aacccTTCGCGGG‑CTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCt > 1:596005/3‑128 (MQ=38) aacccTTCGCGGG‑CTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCt < 2:596005/126‑1 (MQ=38) aGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACGATGTGCTGATCGGACGCCCGCCAGAGCAAGCGGGTGGTGTCAGAGCCCTGCTGCCGCGCCCTGGAAAGCAGGTTCTCACGCTcc > 1:518593/1‑150 (MQ=255) acccTTCGCGGG‑CTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagca > 1:25153/2‑135 (MQ=38) acccTTCGCGGG‑CTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagca < 2:25153/134‑1 (MQ=38) cccTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCa > 2:901654/1‑150 (MQ=255) cccTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCa > 1:1010307/1‑150 (MQ=255) cccTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGATGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCa < 2:1004067/150‑1 (MQ=255) ggcgTG‑CCAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCg < 1:217963/149‑1 (MQ=255) gTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCa < 2:1064065/150‑1 (MQ=255) gTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCa < 1:1276885/150‑1 (MQ=255) tG‑CAAGCCCGCGAAGGGGTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGGCGGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCGCCCAGACCGGCAg > 1:90428/1‑150 (MQ=255) gCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAGTGTCg > 2:191916/1‑150 (MQ=255) | TGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGA‑TGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTG‑CAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAGTGTCG > NC_002947/5740382‑5740677 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |