| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 917692 = | 62 (0.990) | 16 (0.280) | 15/240 | 3.4 | 20.7% | intergenic (‑123/+76) | PP_0798/opdC | GGDEF domain‑containing protein/histidine‑specific outer membrane porin D |
| ? | NC_002947 | 917754 = | 66 (1.160) | intergenic (‑185/+14) | PP_0798/opdC | GGDEF domain‑containing protein/histidine‑specific outer membrane porin D | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
AGCCAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/917851‑917692‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctcctacaCTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAG > NC_002947/917754‑917896 AGCCAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACC < 2:155978/150‑1 GCCAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCC > 1:433558/1‑150 TTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTA < 1:1558474/150‑1 CAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCG < 1:145899/129‑1 CAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCG > 2:145899/1‑129 ACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGC > 2:720744/1‑85 ACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGC < 1:720744/85‑1 ATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAG < 1:1377342/95‑1 ATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAG > 2:1377342/1‑95 AGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTTTACCCGCgaa > 2:854961/1‑57 AGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTTTACCCGCgaa < 1:854961/60‑4 TAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAA > 1:1253716/1‑150 AGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAAC > 1:1099844/1‑150 CGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGG < 2:1253716/150‑1 CCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCG > 1:121121/1‑150 CCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGC > 1:665695/1‑150 CCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGG > 1:878427/1‑150 CGCGAAGCAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGC < 1:724324/143‑1 CGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGC > 2:724324/1‑143 GCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTT > 1:488395/1‑116 GCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTT < 2:488395/116‑1 AGAAGGCTTCGCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTG < 2:878427/150‑1 GAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGT < 2:1099844/150‑1 CGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCAC < 2:121121/150‑1 CCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCC < 2:665695/150‑1 CTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGA < 1:447153/150‑1 TCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAG < 1:630076/150‑1 CTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAG > 2:48026/1‑139 CTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAG < 1:48026/139‑1 AGCCAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/917851‑917692‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctcctacaCTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAG > NC_002947/917754‑917896 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |