New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4586100	63 (1.010)	12 (0.270)	12/186	3.1	24.3%	intergenic (+139/+78)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586128	30 (0.680)					intergenic (+167/+50)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
Rejected: Coverage evenness skew score above cutoff.

CGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAA  >  NC_002947/4585981‑4586277                                                                                                                                                     |                                                                                                                                                      cGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGccc                                                                                                                                                     <  1:951345/150‑1 (MQ=255)     aaCAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCCGCACCtcg                                                                                                                                                 <  2:791510/150‑3 (MQ=255)       aacgtGATCTGCGCTGAGCCAGAGAAAGGTTCCGCATGACCGGGTGCTTGGCACGCTGAAGATCTGCCATTGATCGGGCCGGCCGATTCGCGGGTACACCCGCTCCTCCCTCTGACAGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTa                                                                                                                                               <  2:561245/146‑1 (MQ=255)              tCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCgg                                                                                                                                        <  2:119798/150‑1 (MQ=255)               cTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTCGCCATATGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCggg                                                                                                                                       <  1:967313/150‑1 (MQ=255)               cTGCGCTCCTCCATTGCATGGTTGACGTCGTCCTGCTGTTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGcctg                                                                                                                                       <  1:849990/150‑4 (MQ=37)                       ctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCcg                                                                                                                               >  2:667357/1‑150 (MQ=255)                           aTTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGaa                                                                                                                           <  1:667357/150‑1 (MQ=255)                               aaaGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCAGCGAAGAgg                                                                                                                       <  2:412148/150‑1 (MQ=255)                                    ttGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGGCAGCGCC‑GCATTCAAGGCCGGCACGGTCCCTGGTAGGAGCGGGttt                                                                                                                                    >  2:69983/1‑132 (MQ=1)                                    ttGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGGCAGCGCC‑GCATTCAAGGCCGGCACGGTCCCTGGTAGGAGCGGGttt                                                                                                                                    <  1:69983/132‑1 (MQ=1)                                            gACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGt                                                                                                                                                <  1:1354915/112‑1 (MQ=255)                                            gACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGt                                                                                                                                                >  2:1354915/1‑112 (MQ=255)                                                       tGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGt                                                                                                                                      <  1:76730/111‑1 (MQ=255)                                                       tGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGt                                                                                                                                      >  2:76730/1‑111 (MQ=255)                                                               tGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCGGCTCGTACCAGGGACCGTGCCGGCCGTGCATG‑CGGCGCTGCCTCGGGTAGGAGCGAGTTGACCCGCGAAGGGGCCGGCCGCGCCAGCACATCCACCCGCAGAGGc                                                                                       >  2:630150/1‑150 (MQ=38)                                                                 aaGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAg                                                                                     >  2:1039588/1‑150 (MQ=255)                                                                           aTTGATCGGGCCGGCCTCTTCGCGGGTAAACCAGCCCTTACGAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGGTTACCCGCGAAGAGGCCGGCCGCGGCGGCACAGGAACCCGCAGGTGCAGCCGCAGtctc                                                                           >  2:461783/1‑150 (MQ=25)                                                                              gATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGc                                                                        <  1:1039588/150‑1 (MQ=255)                                                                                   ggccggccTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGt                                                                                                                                      <  2:930486/83‑1 (MQ=255)                                                                                   ggccggccTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGt                                                                                                                                      >  1:930486/1‑83 (MQ=255)                                                                                      cggccTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGa                                                                >  2:531644/1‑150 (MQ=255)                                                                                         ccTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTcc                                                                          <  1:115737/137‑1 (MQ=255)                                                                                         ccTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTcc                                                                          >  2:115737/1‑137 (MQ=255)                                                                                           tctTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAggcc                                                                                                                     >  2:1380374/1‑92 (MQ=255)                                                                                           tctTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAggcc                                                                                                                     <  1:1380374/92‑1 (MQ=255)                                                                                           tctTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCACGCCAGTACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGAtctcc                                                           >  2:1477992/1‑149 (MQ=255)                                                                                                   ggTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACCGATCTCACGCATGCg                                                   >  1:1045183/1‑150 (MQ=255)                                                                                                       aaCCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAAc                                               >  2:521548/1‑150 (MQ=255)                                                                                                       aaCCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGACGCGCCAGCACATCAACCCGCAGATACAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAAc                                               >  1:270041/1‑150 (MQ=255)                                                                                                          ccGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCcgc                                                                                                               <  1:970792/83‑1 (MQ=255)                                                                                                          ccGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCcgc                                                                                                               >  2:970792/1‑83 (MQ=255)                                                                                                           cGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCt                                           <  1:521548/150‑1 (MQ=255)                                                                                                           cGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCt                                           <  1:461783/150‑1 (MQ=255)                                                                                                                 tACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCt                                     >  1:723461/1‑150 (MQ=255)                                                                                                                 tACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCt                                     >  2:18652/1‑150 (MQ=255)                                                                                                                    cAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGc                                  <  1:630150/150‑1 (MQ=255)                                                                                                                    cAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACCGATCTCACGCATGCGGAACTTCTGCACCTTGc                                  <  2:1045183/150‑1 (MQ=255)                                                                                                                     aGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGca                                                                                                        <  2:100853/79‑1 (MQ=255)                                                                                                                     aGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGca                                                                                                        >  1:100853/1‑79 (MQ=255)                                                                                                                     aGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGcc                                 >  1:37047/1‑150 (MQ=255)                                                                                                                      gggACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAggccggcc                                                                                                                 <  2:97238/69‑1 (MQ=255)                                                                                                                      gggACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAggccggcc                                                                                                                 >  1:97238/1‑69 (MQ=255)                                                                                                                      gggACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGGCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCcg                                >  1:1032690/1‑150 (MQ=255)                                                                                                                       ggACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCacac                                                                   >  2:1352973/1‑114 (MQ=255)                                                                                                                       ggACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCacac                                                                   <  1:1352973/114‑1 (MQ=255)                                                                                                                                    cTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAgg                                                                                                                       <  2:414045/49‑1 (MQ=255)                                                                                                                                    cTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAgg                                                                                                                       >  1:414045/1‑49 (MQ=255)                                                                                                                                    cTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCgg                  <  2:37047/150‑1 (MQ=255)                                                                                                                                       gAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTa               <  1:531644/150‑1 (MQ=255)                                                                                                                                             cggccCTGCTCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCTACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCAGGCGGAACTTCTGCACCATGCCGGTCACGGTCATCGGGTACtcgt          <  1:215907/150‑1 (MQ=39)                                                                                                                                                     ccccTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACaaaa  >  1:6423/1‑150 (MQ=255)                                                                                                                                                     ccccTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACACGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACaaaa  >  2:1273179/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAA  >  NC_002947/4585981‑4586277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.