| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2939301 = | 1 (0.030) | 14 (0.420) | 12/254 | 1.8 | 80.2% | intergenic (‑204/+236) | PP_2570/PP_2572 | transposase/hypothetical protein |
| ? | NC_002947 | 2939337 = | 6 (0.180) | intergenic (‑240/+200) | PP_2570/PP_2572 | transposase/hypothetical protein | |||||
CTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAAC > NC_002947/2939153‑2939450 | cgaggcctgtgttgatcctttcgcgggtgaacccgttcctacagcagtacctgtaggagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagaa > 2:791388‑M1/149‑150 (MQ=255) gaggcctgtgttgatcctttcgcgggtgaacccgttcctacagcagtacctgtaggagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagaaa > 2:538212‑M1/148‑150 (MQ=255) gcctgtgttgatcctttcgcgggtgaacccgttcctacagcagtacctgtaggagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAgg > 1:188842‑M1/145‑150 (MQ=255) gcctgtgttgatcctttcgcgggtgaacccgttcctacagcagtacctgtaggagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAgg < 1:423595‑M1/6‑1 (MQ=255) ctgtgttgatcctttcgcgggtgaacccgttcctacagcagtacctgtaggagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAggcg < 2:153281‑M1/8‑1 (MQ=255) ctgtgttgatcctttcgcgggtgaacccgttcctacagcagtacctgtaggagatcacccagcccttccgcgctccatcgtcgcgcagcaaacaagaagtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAggcg > 1:107037‑M1/143‑150 (MQ=255) gtgaacccgttcctacagcagtacctgtaggagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGTTGGCCCTACCGGGCCAAc > 1:545023‑M1/123‑150 (MQ=255) tacagcagtacctgtaggagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGTTGGCCCTACCGGGCCAACCGc < 1:239544‑M1/31‑1 (MQ=255) tacagcagtacctgtaggagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGTTGGCCCTACCGGGCCAACCGc > 2:239544‑M1/110‑140 (MQ=255) atcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAggcg > 1:777562‑M1/90‑97 (MQ=255) atcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAggcg < 2:777562‑M1/8‑1 (MQ=255) cagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAAccgac > 1:573150‑M1/84‑113 (MQ=255) cagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAAccgac < 2:573150‑M1/32‑3 (MQ=255) ttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAAcc > 1:395547‑M1/36‑64 (MQ=255) ttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAAcc < 2:395547‑M1/29‑1 (MQ=255) gaaaaagAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCt > 2:130293‑M1/8‑125 (MQ=255) gaaaaagAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCt < 1:130293‑M1/118‑1 (MQ=255) gaaaaagAAAAGGCGGTTGGCCCGGTAGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTa > 2:162624‑M1/8‑138 (MQ=255) gaaaaagAAAAGGCGGTTGGCCCGGTAGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTa < 1:162624‑M1/131‑1 (MQ=255) aaaagAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGAtc > 1:689698‑M1/6‑131 (MQ=255) aaaagAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGAtc < 2:689698‑M1/126‑1 (MQ=255) aaaGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGTACTGCTGTa > 1:809406/1‑150 (MQ=38) gaggAAAAGGCGGCTGGCCCTACAGGAACCTCCGCCTTAACTCAGTCAAGATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGTACTGCTGTAg > 2:799147‑M1/5‑150 (MQ=255) AAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAAc < 1:469054‑M1/150‑1 (MQ=255) | CTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAAC > NC_002947/2939153‑2939450 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |