New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3947957 =	29 (0.810)	7 (0.250)	6/216	2.8	23.7%	coding (136/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	3948042 =	22 (0.770)					coding (51/1797 nt)	PP_3483	type II secretion system protein

AGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTC  >  NC_002947/3947895‑3948182                                                                                                                                                    |                                                                                                                                             aGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCCTGCCCGCGCAGACga                                                                                                                                            >  1:253768/1‑149 (MQ=255)   gggggtGCGGAGGGGCCGTGGCCAGGAGGTCGGGGGGGTGGGCGGAGAGTTTTGCTGGGTTCGTCGCGGGCATGCCCGCTCGCACAGGTACAGCGCAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCg                                                                                                                                          <  2:377339/145‑1 (MQ=255)               gggCCTGGGCCAGGAGGCCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACAGCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTg                                                                                                                              <  1:503970/150‑1 (MQ=255)                 gCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTACCACACGTACATCACAGGTCTATGGTCTCAGCAGTTTTTGTGGGCGCGGGCATGCCCGCGAAGACGTCGGTGGGGGCTTTGCa                                                                                                                            >  1:274876/1‑150 (MQ=255)                 gCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTGCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACCGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCa                                                                                                                            <  2:717630/150‑1 (MQ=255)                        ccAGGAGGGCGCGGGGGGAGGCGGAAATTTTTGCTGGGTTCGGCGCGGGCATGGCCGCTCCCACAGGTACATCAGGGGTCTGTGGGATGTATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCg                                                                                                                     <  1:694981/150‑1 (MQ=255)                         cAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgg                                                                                                                    >  2:530419/1‑150 (MQ=255)                         cAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgg                                                                                                                    >  2:791829/1‑150 (MQ=255)                         cAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAAATCTGTGGGCGGCATACATCCTGGGGGAGCCGGGAAACCCGCGAGGACGTCGGTGCAGGCGTTGCAGAtgcgcg                                                                                                                    >  1:177652/1‑145 (MQ=255)                           ggaggTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgggg                                                                                                                  >  1:99351/1‑150 (MQ=255)                                  gcgGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATc                                                                                                           >  2:589102/1‑150 (MQ=255)                                  ccccggaatctgcaaagcctgcaccgacgtcttcgcgggcatgcccgctcccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCg                                                                                                                                          <  1:524864‑M2/5‑1 (MQ=255)                                  ccccggaatctgcaaagcctgcaccgacgtcttcgcgggcatgcccgctcccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCg                                                                                                                                          >  2:524864‑M2/115‑119 (MQ=255)                                              ggAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTgg                                                                                               >  2:552199/1‑150 (MQ=255)                                                 aaTTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCAt                                                                                            <  1:552199/150‑1 (MQ=255)                                                      ttGCTGGGTTCTTCGCGGGCATGACCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTAGGAGCGGGCGGGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCt                                                                                       >  1:682488/1‑150 (MQ=255)                                                          cgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgggg                                                                                                                  >  2:524864‑M1/6‑119 (MQ=255)                                                          cgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgggg                                                                                                                  <  1:524864‑M1/114‑1 (MQ=255)                                                           gggTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCTTACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCggg                                                                                                                   <  2:866112/117‑1 (MQ=255)                                                           gggTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCggg                                                                                                                   >  1:866112/1‑117 (MQ=255)                                                                     CGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAgg                                                                        >  1:530419‑M1/1‑150 (MQ=255)                                                                          ATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGATCGGACATGCTCGCGAAGACGTCGGTGCAGGATTTGCAGATTTCGGGCTTGCATCGAATTCTTCTGGCATGGCCTGCGAGTCAGCTCATGGgcgc                                                                   <  2:660342‑M1/150‑1 (MQ=255)                                                                          ATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTg                                                                                                <  2:97290‑M1/121‑1 (MQ=255)                                                                          ATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTg                                                                                                >  1:97290‑M1/1‑121 (MQ=255)                                                                             CCCGCTCCCACAGGTGCATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAgg                                                                        >  2:822073‑M1/1‑142 (MQ=255)                                                                             CCCGCTCCCACAGGTGCATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAgg                                                                        <  1:822073‑M1/142‑1 (MQ=255)                                                                              ccgctcccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCggg                                                                                                                   <  2:601982‑M2/28‑1 (MQ=255)                                                                              ccgctcccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCggg                                                                                                                   >  1:601982‑M2/71‑98 (MQ=255)                                                                              ccgctcccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCg                                                               >  2:647840‑M2/71‑150 (MQ=255)                                                                              CCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgggg                                                                                                                  >  1:515916‑M1/1‑99 (MQ=255)                                                                              CCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgggg                                                                                                                  <  2:515916‑M1/99‑1 (MQ=255)                                                                                GCTTCCACGTGTATATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCa                                                             >  1:797716‑M1/1‑150 (MQ=255)                                                                                   cccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGACTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTCCGACTCGGCTCAGGGGCGCGCCGCAggc                                                          >  2:47158‑M2/66‑150 (MQ=255)                                                                                    CCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTACGCTCAGGGGCGCGTCGCAggct                                                         <  1:744630‑M1/150‑1 (MQ=255)                                                                                      acagggtgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggctgg                                                       <  1:47158‑M2/88‑1 (MQ=255)                                                                                            atagcacgGGTGTGTGGGCTGCTTACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGc                                                 <  2:177652/146‑1 (MQ=255)                                                                                                  caGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCGTGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAgggg                                           >  1:706851/1‑150 (MQ=255)                                                                                                       cTGTGGGCTGTATACATCGTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCgg                                      <  2:253768/150‑1 (MQ=255)                                                                                                        tgtgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCggg                                     >  1:521631/1‑150 (MQ=255)                                                                                                                  aTACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTAtt                           >  1:360167/1‑150 (MQ=255)                                                                                                                      aTCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTcccc                       <  2:521631/150‑1 (MQ=255)                                                                                                                                ggcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGt             <  2:99351‑M2/130‑1 (MQ=255)                                                                                                                                           ccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggc                                                          >  2:561866‑M2/10‑94 (MQ=255)                                                                                                                                           ccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggc                                                          <  1:561866‑M2/85‑1 (MQ=255)                                                                                                                                           ccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCCGGGGTGCGGGCGCCGCTATGCCCCTGTCAGCAGCTGAtcgtcgtc  >  2:189374‑M2/10‑150 (MQ=255)                                                                                                                                           ccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGAtcgtcgtc  >  2:493416‑M2/10‑150 (MQ=255)                                                                                                                                           ccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGAtcgtcgtc  <  2:706851‑M2/141‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                             AGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTC  >  NC_002947/3947895‑3948182

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.