New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5382480 | 27 (0.750) | 6 (0.230) | 6/202 | 2.6 | 20.3% | intergenic (+52/+81) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR |
? | NC_002947 | = 5382508 | 27 (1.020) | intergenic (+80/+53) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR |
CCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTG > NC_002947/5382361‑5382654 | ccATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtc > 2:303255‑M2/1‑148 (MQ=255) aTGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCGCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcct > 1:269850‑M2/1‑146 (MQ=255) cgggAACGCGATTCCAACCGCGAGCTGAAGCGGGCTGTGCGTAACAATGGCAAGGAAGAGTAACTACTCTCCATCCGGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCtgtg < 1:195530/147‑1 (MQ=255) gAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtggga > 2:31247‑M2/1‑140 (MQ=255) aCGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTGCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagc > 2:628196‑M2/1‑138 (MQ=255) ttCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggctt > 2:172244‑M2/1‑132 (MQ=255) tCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCACATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttg > 1:708290‑M2/1‑131 (MQ=255) ggCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagagg > 1:355424‑M2/1‑95 (MQ=255) ggCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagagg < 2:355424‑M2/126‑32 (MQ=255) ctactCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGCTTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATACAAGCATAAACGGCCGCTGcgccg > 2:594871/1‑150 (MQ=37) ctctTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGctc > 1:295484/1‑150 (MQ=255) ctctTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGctc > 2:387411/1‑150 (MQ=255) tctTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctg > 2:37049‑M2/1‑76 (MQ=255) tctTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctg < 1:37049‑M2/81‑6 (MQ=255) cTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGCATGGCACCAGATTCCAGCCCGGCGCCTATCCTGTGGCAGCGGGCTTGCCCGCGAAGCGGCCGGCACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCgggc > 1:433270/1‑150 (MQ=38) cTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCgcgc < 2:295484/150‑1 (MQ=255) ccTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCTGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTg < 1:387411/150‑1 (MQ=255) ttCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTCTCCTGTGGGAGCGGGCTTGCCCGCGAAGCGGCCGGTCCTGCCCATAAAAGCCTCCGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCCCTGGCct > 2:355987/1‑150 (MQ=38) ggCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGc > 1:781321/1‑143 (MQ=255) ggCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGc < 2:781321/143‑1 (MQ=255) ccGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgc > 2:738320‑M2/1‑42 (MQ=255) ccGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgc < 1:738320‑M2/108‑67 (MQ=255) cGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCACCGTCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTc < 1:594871/150‑1 (MQ=255) gCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgctgcagctcgcggttggaatcgcgt < 2:833778‑M2/150‑111 (MQ=255) ccACAGGAATGGCACCAGATGCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATgca > 2:234644/1‑150 (MQ=255) cacaGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgctgcagctcgcggttggaatcgcgttcgcg < 2:858532‑M2/150‑116 (MQ=255) cacaGCAATCGCACCACCTTCAAGCCCGGCCCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATgcag > 2:321950/1‑150 (MQ=39) acaGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTgc < 2:606081/138‑1 (MQ=255) acaGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTgc > 1:606081/1‑138 (MQ=255) caGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGctt > 1:605411/1‑129 (MQ=255) caGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGctt < 2:605411/129‑1 (MQ=255) aGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCAc < 1:861514/150‑1 (MQ=255) gAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCAcct > 1:85547/1‑150 (MQ=255) aaTGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCAcctc < 2:85547/150‑1 (MQ=255) gCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGc > 1:304600/1‑150 (MQ=255) ccAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgctgcagctcgcggttggaatcgcgttcgcgcatggtgtcgcgc > 1:858532‑M2/1‑22 (MQ=255) cAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACAt > 1:55365/1‑150 (MQ=255) cAAGCCCGGCGCCTATCCTGGGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACaaaa < 2:433270/150‑1 (MQ=255) gCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgctgcagctcgcggttggaatcgcgttcgcgcatggtgtcgcgcttgtcgaatt > 1:833778‑M2/1‑12 (MQ=255) cccGGTGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAAtgtg < 1:355987/150‑1 (MQ=255) cccGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAAtgtg > 2:418488/1‑150 (MQ=255) cGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGcc < 2:55365/150‑1 (MQ=255) ggCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCg < 1:234644/150‑1 (MQ=255) ccTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTg < 1:418488/150‑1 (MQ=255) | CCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTG > NC_002947/5382361‑5382654 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |