New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 337811	36 (1.000)	12 (0.420)	8/216	2.2	30.6%	intergenic (‑58/+71)	PP_0279/PP_0280	hypothetical protein/amino acid ABC transporter permease
	?	NC_002947	= 337839	26 (0.910)					intergenic (‑86/+43)	PP_0279/PP_0280	hypothetical protein/amino acid ABC transporter permease

TCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAACACGCCTGCGGCGAAGAA  >  NC_002947/337690‑337986                                                                                                                                                       |                                                                                                                                                    tCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTac                                                                                                                                                     >  2:809889/1‑150 (MQ=255)         tGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACacctgtgg                                                                                                                                             >  2:679652‑M2/1‑142 (MQ=255)                  gCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACacctgtgggagcgggcg                                                                                                                                    >  1:809889‑M2/1‑133 (MQ=255)                               tGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGca                                                                                                                       <  1:342242/150‑1 (MQ=255)                                     ggTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGGTACGCCTGTGGGAGCGGGCGTGCCCGCGAAGcagtcagt                                                                                                                 <  2:739379/150‑1 (MQ=255)                                               gtgGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAg                                                                                                       <  2:798479/150‑1 (MQ=255)                                                                            gtggtgGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCa                                                                          <  1:39610/150‑1 (MQ=255)                                                                               gtggtTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTac                                                                                                                                                     >  2:40302/1‑72 (MQ=255)                                                                               gtggtTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTac                                                                                                                                                     <  1:40302/72‑1 (MQ=255)                                                                                             ctctTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCC‑ACATTCCAGGTGGCCGCTACACCTGTGGGAGCGGGCCTGCCCGCGAAGCACTCCGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACCCGCAACCAGCGCGCCGGCAGCTTGa                                                         >  2:390009/1‑150 (MQ=37)                                                                                                        cACGCCCGCTCCCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCAcc                                              <  1:168617/150‑1 (MQ=255)                                                                                                             ccGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCAt                                         >  2:838076/1‑150 (MQ=21)                                                                                                                  cccACAGGCATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACg                                    <  1:390009/150‑1 (MQ=255)                                                                                                                   ccACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTggcaggca                                                                                        >  1:485807/1‑97 (MQ=255)                                                                                                                   ccACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTggcaggca                                                                                        <  2:485807/97‑1 (MQ=255)                                                                                                                    cacaGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACgag                                  >  1:357356/1‑150 (MQ=25)                                                                                                                    cacaGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaagcacccgcttccaggccctcgaccag                                  <  1:365427‑M2/150‑116 (MQ=255)                                                                                                                    cacaGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACgag                                  >  1:694126/1‑150 (MQ=255)                                                                                                                     acaGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaa                                                            >  2:817767‑M2/1‑34 (MQ=255)                                                                                                                     acaGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaa                                                            <  1:817767‑M2/123‑90 (MQ=255)                                                                                                                     acaGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccc                                                                   <  1:513970‑M2/116‑83 (MQ=255)                                                                                                                     acaGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccc                                                                   >  2:513970‑M2/1‑34 (MQ=255)                                                                                                                     acaGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGca                                                                                                                       <  2:52637/64‑1 (MQ=255)                                                                                                                     acaGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGca                                                                                                                       >  1:52637/1‑64 (MQ=255)                                                                                                                     acaGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGCGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACgaga                                 >  1:96572/1‑150 (MQ=255)                                                                                                                     acaGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACgaga                                 >  1:756145/1‑150 (MQ=255)                                                                                                                         gTATAGCGCC‑ACATTCAAGGTTGGCGCTATacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaagcacccgcttccaggccctcgaccagttcct                             <  2:493641‑M2/150‑121 (MQ=255)                                                                                                                         gTATAGCGCC‑ACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaagcacccgcttccaggccctcgaccagttcct                             <  1:483491‑M2/150‑121 (MQ=255)                                                                                                                         gTATAGCGCC‑ACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctc                                                                            >  2:990‑M2/1‑30 (MQ=255)                                                                                                                         gTATAGCGCC‑ACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctc                                                                            <  1:990‑M2/103‑74 (MQ=255)                                                                                                                         gTATAGCGCC‑ACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaacca                                                                                                          <  2:221133‑M2/73‑44 (MQ=255)                                                                                                                         gTATAGCGCC‑ACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaacca                                                                                                          >  1:221133‑M2/1‑30 (MQ=255)                                                                                                                         gTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCAc                             >  1:847989/1‑150 (MQ=255)                                                                                                                         gTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCAc                             >  1:166125/1‑150 (MQ=255)                                                                                                                          tataGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCAcc                            >  1:544261/1‑150 (MQ=255)                                                                                                                           ataGCGCC‑ACATTCAAGGTTGGCGCTATacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaagcacccgcttccaggccctcgaccagttcctga                           <  1:726794‑M2/150‑123 (MQ=255)                                                                                                                                 cc‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGa                     >  1:302009/1‑150 (MQ=255)                                                                                                                                       ttCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGt                        <  2:154793/142‑1 (MQ=255)                                                                                                                                       ttCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGt                        >  1:154793/1‑142 (MQ=255)                                                                                                                                             gTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAac                   <  1:805813/141‑1 (MQ=255)                                                                                                                                             gTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAac                   >  2:805813/1‑141 (MQ=255)                                                                                                                                                   gcTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAACAAGCTTGCGGCgaag    >  1:352921/1‑150 (MQ=255)                                                                                                                                                     tACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAACACGCCTGCGGCgaagaa  <  2:166125/150‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                    TCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAACACGCCTGCGGCGAAGAA  >  NC_002947/337690‑337986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.