New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 2553944NA (NA)26 (0.510) 14/250 3.0 42.7% intergenic (+32/‑119) PP_5SF/PP_2240 5S ribosomal RNA/ABC transporter permease/ATP‑binding protein
?NC_002947 5307467 = 38 (0.690)intergenic (‑168/+18) recC/PP_5SG multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA

CCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGC  >  NC_002947/2553829‑2554092
                                                                                                                   |                                                                                                                                                    
ccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTgg                                                                                                                    <  2:1201532/150‑1 (MQ=34)
          cTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTTTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGa                                                                                                          >  1:806797/1‑150 (MQ=21)
           tCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGaa                                                                                                         >  2:1042583/1‑150 (MQ=34)
                      aCGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGa                                                                                              <  2:574823/150‑1 (MQ=34)
                              tCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAAATGCTCGAATCACTGCGGGAGCGGAGAt                                                                                      >  2:117410/1‑150 (MQ=21)
                               cGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATg                                                                                     >  2:1235266/1‑150 (MQ=34)
                                      ggTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCAcc                                                                                <  2:1280848/148‑1 (MQ=34)
                                      ggTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCAcc                                                                                >  1:1280848/1‑148 (MQ=34)
                                            gtgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTAAAAAAAAAAAAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGc                                                                        <  2:568157/150‑1 (MQ=11)
                                             tgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAACCTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGcc                                                                       <  1:117094/150‑1 (MQ=21)
                                              ggggTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCg                                                                      <  1:261009/150‑1 (MQ=34)
                                                ggTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAACACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGgt                                                                    <  1:123609/150‑1 (MQ=21)
                                                ggTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAAATGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGgt                                                                    <  1:117410/150‑1 (MQ=21)
                                                      cccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTcgc                                                              >  1:1203409/1‑150 (MQ=37)
                                                       ccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGcc                                                                       >  1:446057/1‑140 (MQ=34)
                                                       ccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGcc                                                                       <  2:446057/140‑1 (MQ=34)
                                                              agagTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCgg                                                            <  1:224883/144‑1 (MQ=38)
                                                              agagTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCgg                                                            >  2:224883/1‑144 (MQ=38)
                                                                        aTCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTCGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTAc                                            <  1:533962/150‑1 (MQ=38)
                                                                              aaGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTTTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCa                                      <  2:806797/150‑1 (MQ=255)
                                                                                    cATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTaaa                                                       <  1:57648/127‑1 (MQ=39)
                                                                                    cATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTaaa                                                       >  2:57648/1‑127 (MQ=39)
                                                                                    cATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAAt                                >  1:527979/1‑150 (MQ=255)
                                                                                     aTTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAAtg                               >  2:1260308/1‑150 (MQ=255)
                                                                                      tttCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGc                                                  >  1:107568/1‑130 (MQ=38)
                                                                                      tttCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAAtgt                              <  1:1042583/150‑1 (MQ=255)
                                                                                      tttCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGCGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGc                                                  <  2:107568/130‑1 (MQ=255)
                                                                                        tCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGc                            <  2:1203409/150‑1 (MQ=255)
                                                                                             aaaaCCCTATCTTCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCAt                       <  2:95355/150‑1 (MQ=255)
                                                                                               aCCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCAttt                     <  1:1235266/150‑1 (MQ=255)
                                                                                                                 aGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATAc                 <  2:1207515/136‑1 (MQ=255)
                                                                                                                 aGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATAc                 >  1:1207515/1‑136 (MQ=255)
                                                                                                                  ggTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGGGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGc  >  2:146831/1‑150 (MQ=255)
                                                                                                                   gTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCgg                                                            <  1:92807/91‑1 (MQ=255)
                                                                                                                   gTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCgg                                                            >  2:92807/1‑91 (MQ=255)
                                                                                                                   |                                                                                                                                                    
CCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAATCACTGCGGGAGCGGAGATGGCACCGGCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAATGACAGC  >  NC_002947/2553829‑2554092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.