New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 197078265 (1.180)10 (0.210) 10/232 3.7 16.9% intergenic (+33/‑233) mtnA/PP_mr25 methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
?NC_002947 = 1970844 43 (0.920)intergenic (+95/‑171) mtnA/PP_mr25 methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCAT  >  NC_002947/1970696‑1970985
                                                                                                                                                    |                                                                                                                                             
cgcCCGGATGCTGCCAAGCTGGCGCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGa                                                                                                                                              <  1:175622/150‑1 (MQ=255)
  cacGGATGATGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGAGCCTCCACTGATTCTGTATCGCCTCACCGGCCTCTTCCCGCGCTTGCCCGCTCCCCCTGAGATAACGCATAGCTTTATGGCCGTGGTGAAAATGTCGGTGCGGgagacc                                                                                                                                            >  2:109673/3‑148 (MQ=255)
           tgcCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAaga                                                                                                                                   <  1:592195/150‑1 (MQ=255)
           tgcCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAaga                                                                                                                                   <  1:125049/150‑1 (MQ=255)
           tgcCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCACTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGCGGGCGGGCGAGCCCGCGCagc                                                                                                                                   >  2:553107/1‑149 (MQ=255)
             ccAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTAAACCTGTGGGATCAGGCGAACCCGCGAAGAgg                                                                                                                                 >  2:308915/1‑150 (MQ=255)
             ccAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGCGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAgg                                                                                                                                 >  2:165014/1‑150 (MQ=255)
              cAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCCCTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGc                                                                                                                                <  1:1226812/150‑1 (MQ=255)
                          gCTGGTTTGCCGCAAGCGCCTGTACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCaa                                                                                                                    <  1:1000235/150‑1 (MQ=255)
                          gCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCaa                                                                                                                    >  2:1172531/1‑150 (MQ=255)
                          gCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCaa                                                                                                                    <  1:618626/150‑1 (MQ=255)
                            ggggttGCCGCCAGCGCCGGCACTGATTTTGTATCGCCTCCCCGGCCTCTGCGCGGGCGTCCCCGCTCCCACTGGTAGATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATa                                                                                                                  <  1:261697/146‑1 (MQ=38)
                              gTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACa                                                                                                                >  2:1135190/1‑150 (MQ=255)
                                     gCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCg                                                                                                                              <  1:912657/129‑1 (MQ=255)
                                     gCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCg                                                                                                                              >  2:912657/1‑129 (MQ=255)
                                     gCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCa                                                                                                         >  1:637308/1‑150 (MQ=255)
                                      cAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAg                                                                                                        >  2:666357/1‑150 (MQ=255)
                                             ttGCACTGATTTTTTATCGCCTCACCGGCTTCTTCGCGTGCTTGCCCGCTCCCACTGGGATATTGCATGGTCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCaa                                                                                                 <  2:1132611/149‑1 (MQ=39)
                                             cTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCaa                                                                                                 >  1:818793/1‑150 (MQ=255)
                                             cTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGGGGGGGAGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATCAATATACCAGGTTTCaa                                                                                                 <  2:393512/150‑1 (MQ=38)
                                                 aCTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCCCTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGACCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAgcgc                                                                                             >  2:306057/1‑150 (MQ=255)
                                                       tttGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGATGAACCTGTGGGGGCGTGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTga                                                                                       >  2:141653/1‑150 (MQ=255)
                                                         tGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTgaga                                                                                     <  1:666357/150‑1 (MQ=255)
                                                           tATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCgg                                                                                           >  1:1120411/1‑142 (MQ=255)
                                                           tATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCgg                                                                                           <  2:1120411/142‑1 (MQ=255)
                                                              cGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAAc                                                                                <  1:883091/150‑1 (MQ=255)
                                                               gCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACt                                                                               >  1:688487/1‑150 (MQ=255)
                                                                ccTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGCCCTTAGGGCCGTGGTGAACCTGTGGGGGGGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGCGACCAACTg                                                                              >  1:462690/1‑150 (MQ=255)
                                                                  tCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGcc                                                                                                                                           >  1:1094406/1‑87 (MQ=255)
                                                                  tCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGcc                                                                                                                                           <  2:1094406/87‑1 (MQ=255)
                                                                  tCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGcc                                                                            >  1:446408/1‑150 (MQ=255)
                                                                    tccGTCCTCTCCGCGGGCTTGCCCGCTCCGACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCAc                                                                          <  1:109673/149‑1 (MQ=255)
                                                                      cGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACct                                                                        >  2:528306/1‑150 (MQ=255)
                                                                         ccTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCtctc                                                                     <  1:1084009/150‑1 (MQ=255)
                                                                               cgcgGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCAcc                                                               <  2:637308/150‑1 (MQ=255)
                                                                               cgcgGGCTTGCCCGCTACCGCTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGAGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCAcc                                                               <  1:308915/150‑1 (MQ=255)
                                                                                 cgGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGc                                                             >  2:905708/1‑150 (MQ=255)
                                                                                   ggCTTGCCCGCTCCCACTGGGATATCGCATGGCCGTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGccc                                                           >  1:1105398/1‑150 (MQ=255)
                                                                                    gCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGcccc                                                          >  2:245345/1‑150 (MQ=255)
                                                                                              ccccGCTGGGATATCGCATGGCCTTAGGGCCGGGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTtgtg                                                <  1:165014/149‑1 (MQ=255)
                                                                                                ccACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGAt                                              >  1:234454/1‑150 (MQ=255)
                                                                                                  aCTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATaa                                            <  1:1135190/150‑1 (MQ=255)
                                                                                                   gtGGGGTGTCGCGTGGCCTGAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAAc                                           <  1:685650/149‑1 (MQ=255)
                                                                                                           tCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCCACTGCCACCTCTCCCCTCCTCCCCCTCGTTTGTGATAACATCCGGCa                                   <  2:818793/150‑1 (MQ=255)
                                                                                                           tCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCa                                   <  2:820091/150‑1 (MQ=255)
                                                                                                               aTGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACt                                                                               >  1:767192/1‑102 (MQ=255)
                                                                                                               aTGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACt                                                                               <  2:767192/102‑1 (MQ=255)
                                                                                                                   ccTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACGAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCaa                           >  1:1092971/1‑150 (MQ=255)
                                                                                                                            cGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGTGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATGACATCCGGCGGTTTCCAAGACCGCCCa                  >  1:83726/1‑150 (MQ=255)
                                                                                                                                      cTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACggcggc        >  1:121682/1‑150 (MQ=255)
                                                                                                                                       ggtgGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGcc       <  1:553107/149‑1 (MQ=255)
                                                                                                                                        ctcttcgcgggctCGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCt      >  1:1311542/7‑150 (MQ=255)
                                                                                                                                          ggggggggGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTc    <  2:462690/150‑1 (MQ=255)
                                                                                                                                           ggggCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCa   <  1:245345/150‑1 (MQ=255)
                                                                                                                                            gggcgggcGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCTTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCAt  >  2:800515/1‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                             
CGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCAT  >  NC_002947/1970696‑1970985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.