New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4586100	47 (0.850)	10 (0.250)	8/196	3.6	26.0%	intergenic (+139/+78)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586128	23 (0.580)					intergenic (+167/+50)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
Rejected: Coverage evenness skew score above cutoff.

GAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTC  >  NC_002947/4585984‑4586267                                                                                                                                                  |                                                                                                                                            gAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTg                                                                                                                                        <  1:256536/150‑1 (MQ=255)    cAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTa                                                                                                                                     <  2:875504/150‑1 (MQ=255)            cTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGTCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCggg                                                                                                                             <  2:953476/150‑1 (MQ=255)            cTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCggg                                                                                                                             <  2:959680/150‑1 (MQ=255)             tGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGt                                                                                                                            <  2:409170/150‑1 (MQ=255)                    ctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCcg                                                                                                                     >  2:1087487/1‑150 (MQ=255)                        aTTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGTGGGTAATCCCGCTCCTACCAGGGGCAGCGCC‑GTATTCAAGGCCGGCACGGTCCCTGGTAGGAGCGGGTTTACCCGCGaa                                                                                                                 <  2:595399/150‑1 (MQ=14)                             aaGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAggc                                                                                                            <  1:730834/150‑1 (MQ=255)                               ggTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTATGTGCGGGTTTACCCGCGAAGAggccg                                                                                                          <  1:702460/150‑1 (MQ=255)                                       aTGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGaa                                                                                                                 >  2:354368/1‑135 (MQ=255)                                       aTGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGaa                                                                                                                 <  1:354368/135‑1 (MQ=255)                                                   ttGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTg                                                                                                                                        <  2:1005441/100‑1 (MQ=255)                                                   ttGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTg                                                                                                                                        >  1:1005441/1‑100 (MQ=255)                                                     ggCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTgg                                                                                                                                       <  2:746187/99‑1 (MQ=255)                                                     ggCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTgg                                                                                                                                       >  1:746187/1‑99 (MQ=255)                                                          ggTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGAt                                                                               <  1:1087487/150‑1 (MQ=255)                                                                              ccgtccggccTCTTCGCGGGTAAACCCGCTCCTACCAGGCCCCCTGCCCGGCCCCAATG‑CGGCGCTGCCCCCGGTACGCGCGGGCTTACCCGCGAAGAGGCCGGCCGCGCCGGCACAGCAACCCTCCGATGCAGCCGCCATCTCCGCcac                                                           >  2:521478/5‑150 (MQ=21)                                                                                    ggccTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCgg                                                                                                                              >  1:404707/1‑77 (MQ=255)                                                                                    ggccTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCgg                                                                                                                              <  2:404707/77‑1 (MQ=255)                                                                                       ctctTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCAGCAAACAGCCCAACTCCAGTAACAGATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGAtctc                                                  >  1:1296648/1‑150 (MQ=255)                                                                                       ctctTCGCGGGTAAACCCACTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGGTCAACACCCTGCAGGTAGACCTGGAAGACACGTCAACCCGCAGATGCAGCCGCAATCTCGGCCAGACTAAtctc                                                  >  1:156951/1‑150 (MQ=255)                                                                                          ttCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAAtc                                                                   >  1:503139/1‑130 (MQ=255)                                                                                          ttCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAAtc                                                                   <  2:503139/130‑1 (MQ=255)                                                                                             gcgGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGAtc                                                    >  1:1032185/1‑142 (MQ=255)                                                                                             gcgGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGAtc                                                    <  2:1032185/142‑1 (MQ=255)                                                                                                     aCCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACt                                    >  1:211424/1‑150 (MQ=255)                                                                                                       ccGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTc                                  >  2:217884/1‑150 (MQ=255)                                                                                                            ccTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGACCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGGACTTCTGCAc                             >  1:587745/1‑150 (MQ=255)                                                                                                             cTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATTCGGAACTTGTGCAcc                            >  1:545485/1‑150 (MQ=255)                                                                                                             cTACCAGGGACCGTGCAGACCGTGAATG‑CAGCGCTGCCCCTGGGAGGAGCGGGCTTACACGGGATGAGGCCGGCGGCGCCAGCACATCAACCTGCAGCTGCAGGGCCGATCTCCGCCACACTGATCTCACGCGTGTGGAACTTCTGCAcc                            >  2:899084/1‑150 (MQ=255)                                                                                                              tACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAagag                                                                                                              >  1:1038163/1‑67 (MQ=255)                                                                                                              tACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAagag                                                                                                              <  2:1038163/67‑1 (MQ=255)                                                                                                              tACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGAt                                                                               <  2:1137178/98‑1 (MQ=255)                                                                                                              tACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGAt                                                                               >  1:1137178/1‑98 (MQ=255)                                                                                                               aCCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTg                                <  2:176967/144‑1 (MQ=255)                                                                                                               aCCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTg                                >  1:176967/1‑144 (MQ=255)                                                                                                                     gACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCcggt                    >  1:324017/1‑150 (MQ=255)                                                                                                                              ggCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCAt           >  1:259011/1‑150 (MQ=255)                                                                                                                                  ttGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCggg       >  2:733879/1‑150 (MQ=255)                                                                                                                                     aaTG‑CGGCGCCGCTCCTGGTAGGAGCGGGGTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTAc    <  1:521478/150‑1 (MQ=255)                                                                                                                                      aTG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACt   >  2:815706/1‑150 (MQ=255)                                                                                                                                       tG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACtc  <  2:259011/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                            GAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTC  >  NC_002947/4585984‑4586267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.