| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,941,126 | Δ1 bp | 5.3% | coding (118/531 nt) | PP_3475 ← | type II secretion system pseudopilin PulG‑like signal peptide protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,941,126 | 0 | T | . | 5.3% | 398.0 / 16.0 | 131 | coding (118/531 nt) | PP_3475 | type II secretion system pseudopilin PulG‑like signal peptide protein |
| Reads supporting (aligned to +/- strand): ref base T (65/58); new base . (4/3); total (70/61) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.80e-01 | |||||||||||
Only 100 of 134 total aligned reads displayed.
CTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCG > NC_002947/3940977‑3941275 | cTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCt > 1:1069617/1‑150 (MQ=255) tGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTc > 2:2938075/1‑150 (MQ=255) cGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGc < 1:338871/150‑1 (MQ=255) gTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCa > 1:2536561/1‑150 (MQ=255) aGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGTTTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGa < 1:2978434/150‑1 (MQ=255) aGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGa > 1:310709/1‑150 (MQ=255) ggTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCg > 2:1288227/1‑150 (MQ=255) ccTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCgg > 1:2392321/1‑150 (MQ=255) tGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTg > 1:324268/1‑150 (MQ=255) tGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTg > 2:2501783/1‑150 (MQ=255) gTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTgg > 2:813371/1‑150 (MQ=255) gTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTgg > 2:2311743/1‑150 (MQ=255) gTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCAGTAGTCGCTGGCCGATTCTTCTTCATCCTGGCTGCCGACCCACAGCAACTGGCGTTCGCGTTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTgg < 1:1465201/150‑1 (MQ=255) gCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGgccg > 1:1192540/1‑150 (MQ=255) cAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCAc < 2:1192540/150‑1 (MQ=255) aGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTg < 1:2247228/129‑1 (MQ=255) aGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTg > 2:2247228/1‑129 (MQ=255) aGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACg > 1:1522191/1‑150 (MQ=255) cTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACgctgct > 1:1075915/1‑150 (MQ=255) tGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCGAGCGC‑CGCCCAgc > 1:1016953/1‑117 (MQ=255) tGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCGAGCGC‑CGCCCAgc < 2:1016953/118‑2 (MQ=255) tGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGctgctg > 2:2089538/1‑150 (MQ=255) gggggTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGa < 1:2409964/150‑1 (MQ=255) ggTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACgct > 2:1479318/1‑142 (MQ=255) atctggCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGATCCGCCATATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCaa < 1:1304713/146‑1 (MQ=255) aCTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCaa < 1:1883087/150‑1 (MQ=255) cTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAAt < 1:601162/150‑1 (MQ=255) tGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTTCGGACCCACAGCAACTGACGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATc > 2:845637/1‑150 (MQ=255) gggCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAAtaa < 2:1234297/150‑3 (MQ=255) ggCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATcag < 2:2536561/150‑1 (MQ=255) gCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGAGCGCAAtagat > 2:1304713/1‑146 (MQ=255) ccAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTg > 2:1751845/1‑116 (MQ=255) cAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATcagcag > 2:785265/1‑150 (MQ=255) ccTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGT‑ACGATCCGGCA‑AAAGGCGAGCAAATCCAGCCGGTTGCCGCCAGCGCCACGCTGCTGACCGCAATCagcagcagc > 1:2663888/1‑150 (MQ=255) cTGGCGAGGCGCGGTAGTAGGTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAgcagcagca < 1:1416994/150‑1 (MQ=255) cTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGt > 2:607777/1‑109 (MQ=255) tGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCa > 2:2750049/1‑136 (MQ=255) tGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCa < 1:2750049/136‑1 (MQ=255) ggCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCAcc < 2:2392321/150‑1 (MQ=255) gAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCa < 1:2805187/92‑1 (MQ=255) gAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCa > 2:2805187/1‑92 (MQ=255) gcgcCGTAGTAGCTGCGCAAGGCTTCGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GTGCTCGCCCAGATGGTGCCGTTGTCCGCCAGGGCCACGCTGCTGACCGTAATGTGCAGCAGAACCCCCAgg < 2:450612/150‑1 (MQ=255) gCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAgcc > 1:2451182/1‑150 (MQ=255) cTGCGCAAGGCCTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACTCTGCTGAc < 2:1652641/113‑1 (MQ=255) cTGCGCAAGGCCTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGAc > 1:1652641/1‑113 (MQ=255) tGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTgg < 1:1529280/90‑1 (MQ=255) cAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCGAGCGC‑CGCCCAgc > 1:144882/1‑73 (MQ=38) aaGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTg < 1:49760/150‑1 (MQ=255) aGGCTTGGGCATACTGGCTGCCGACCCACAGCACCTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGTCCAGATCGTGCCGGTGGCCGCCAGCGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTgg < 2:621998/150‑1 (MQ=255) ggCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGc < 1:2501783/150‑1 (MQ=255) cTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGa < 1:1715143/102‑1 (MQ=255) cTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCt > 2:1445202/1‑150 (MQ=255) ttGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCtt > 2:2412695/1‑150 (MQ=255) tGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTa > 2:1504228/1‑150 (MQ=255) gggCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTAc < 2:1644444/150‑1 (MQ=255) ggCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTAcc > 2:2928029/1‑150 (MQ=255) gCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGgcc < 2:2206362/78‑1 (MQ=255) gCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGgca > 1:2206362/1‑77 (MQ=255) gCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAg < 2:164872/132‑1 (MQ=255) gCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAg > 1:164872/1‑132 (MQ=255) gCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCa < 1:1288227/150‑1 (MQ=255) gCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCa > 1:1293120/1‑150 (MQ=255) tACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTc < 2:921407/150‑1 (MQ=255) cTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAg < 2:1075915/150‑1 (MQ=255) gCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGa > 1:1800671/1‑150 (MQ=255) gCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAaga < 1:2132946/150‑1 (MQ=255) ccGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAagag < 1:1445202/150‑1 (MQ=255) ccGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAagag > 2:2745327/1‑150 (MQ=255) cGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAgg < 1:2542835/150‑1 (MQ=255) gACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTaaa < 2:2942124/117‑1 (MQ=255) gACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTaaa > 1:2942124/1‑117 (MQ=255) gACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTa > 1:980775/1‑115 (MQ=255) gACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCCAACCGCAATCAGCATCAGCACCCCCAGGTATGTAAAGCCCCAGTTGGATTTACCATTCAGCTAAGAGGc > 1:677868/1‑150 (MQ=255) ccACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCATTCCGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGc < 1:2001345/150‑1 (MQ=255) ccACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGc > 1:2202118/1‑150 (MQ=255) cacaGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTg < 1:2431203/51‑1 (MQ=255) gCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCa < 2:2451182/150‑1 (MQ=255) aaCTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCAcg > 2:803870/1‑150 (MQ=255) gCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAgg < 2:1437238/55‑1 (MQ=255) gCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGACGGTGGCCGCCAGGTCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGccc > 1:2932455/1‑150 (MQ=255) gTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTgg < 2:1975004/150‑1 (MQ=255) gTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACACCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTgg < 1:2973672/150‑1 (MQ=255) gcgcT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATcagcagc < 1:1508190/70‑1 (MQ=255) gcgcT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATcagcagc > 2:1508190/1‑70 (MQ=255) cgcT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCAcc < 1:1115539/150‑1 (MQ=255) atcT‑GGGCGAGCGC‑CGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCAcc > 1:1419262/3‑150 (MQ=255) agcT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTCGTCACCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCAcc > 1:727173/2‑150 (MQ=255) tcT‑GGGCGAGCGC‑CGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACTATTCAGCGAAGAGGCTGCCATCCCGCGCCCTCCCTGTGGCACCg > 2:400200/2‑150 (MQ=255) gcT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAgg < 2:1117793/80‑1 (MQ=255) gcT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAgg > 1:1117793/1‑80 (MQ=255) gcT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCg > 1:1950509/1‑150 (MQ=255) gcT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCg > 2:450406/1‑150 (MQ=255) gggCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGctc < 1:2311743/150‑1 (MQ=255) ggcg‑gcGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGctct > 2:522798/1‑150 (MQ=255) gcg‑gcgCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCtt < 1:2089538/150‑1 (MQ=255) cg‑gcgCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCa < 1:1388500/141‑1 (MQ=255) cg‑gcgCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCa > 2:1388500/1‑141 (MQ=255) cTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTc < 1:803870/150‑1 (MQ=255) tCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCg > 2:2221170/1‑150 (MQ=255) tCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCg > 2:1321252/1‑150 (MQ=255) | CTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCT‑GGGCG‑GCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCG > NC_002947/3940977‑3941275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |