| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 499220 | 41 (0.360) | 9 (0.100) | 8/196 | NT | 21.4% | intergenic (+61/‑235) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| ? | NC_002947 | = 499259 | 33 (0.360) | intergenic (+100/‑196) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein | |||||
GGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/499048‑499220‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcatgcccgcgaaGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCCAGCGAG < NC_002947/499259‑499111 GGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT < 2:956642/150‑1 CGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGT < 1:1051929/150‑1 CTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGG < 1:1429861/150‑1 CTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGG < 1:2598773/150‑1 TGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGG > 1:1919761/1‑150 GTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGA > 2:2889756/1‑150 GCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGG < 1:2614735/150‑1 GCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGG > 1:1635439/1‑150 AGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCAT > 1:2374759/1‑150 ACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGC < 2:1919761/150‑1 ATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCG > 2:2216639/1‑150 TCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGC < 1:2126189/150‑1 GCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAA < 2:1235950/150‑1 GCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAACTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGagat > 1:2381397/1‑146 CACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAAGAGGC < 2:2374759/150‑1 ACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAACC‑‑TGTGGGAGCGGGCATGCCCGCGAAGAGGCCGG > 2:1858965/1‑150 CTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAACC‑‑TGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGG < 1:1858965/150‑1 GGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGG < 1:221508/150‑1 CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCG < 1:1231960/119‑1 CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCG > 2:1231960/1‑119 CCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGC < 1:1415060/93‑1 CCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGC > 2:1415060/1‑93 AAGCCTATGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCGGCAGGCCAGGCCCGTTCGCGGGCATGCC < 1:1073566/84‑1 AAGCCTATGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCGGCAGGCCAGGCCCGTTCGCGGGCATGCC > 2:1073566/1‑84 GAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTC > 2:1326486/1‑150 GCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGG > 2:1889802/1‑101 GCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGG < 1:1889802/101‑1 CCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGG < 2:1624220/131‑1 CCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGG > 1:1624220/1‑131 CCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCC > 1:2560218/1‑150 CGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCCA < 1:44230/150‑1 GCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTC < 2:1964893/63‑1 GCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTC > 1:1964893/1‑63 GAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCG < 2:1610008/85‑1 GAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCG > 1:1610008/1‑85 AGAGGCCGGCTCAGCCATAGAGATCAGAATGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCCAGCGAG > 1:563030/1‑150 GGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/499048‑499220‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcatgcccgcgaaGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCCAGCGAG < NC_002947/499259‑499111 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |