| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 614281 = | 28 (0.240) | 8 (0.090) | 6/200 | NT | 21.9% | intergenic (‑97/+81) | dxs/ispA | 1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase |
| ? | NC_002947 | = 4675357 | 34 (0.360) | intergenic (+10/+94) | PP_4137/chrR | outer membrane siderophore receptor/chromate reductase | |||||
GACCAGGCGCTGGCCGCACTGCAAGGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCGACGCATTCGCGGGTAAACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/614451‑614281‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgcattcgcgggtaaacccgCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGCCGGCGTCACGGTCGCTGCATAGCGCTGGTTGGTCAGGTTGCGCAGGT < NC_002947/4675357‑4675211 GACCAGGCGCTGGCCGCACTGCAAGGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCG > 1:128469/1‑150 ACCAGGCGCTGGCCGCACTGCAAGGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCGA < 2:1342842/150‑1 CCAGGCGCTGGCCGCACTGCAAGGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGACTGCGATC‑TTGAATTTGCCGAC < 2:128469/150‑1 GCGCTGGCCGCACTGCAAGGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCGACGCAT < 2:139087/150‑1 TGGCCGCACTGCAAGGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCGACGCATTCGC < 2:2479615/150‑1 TGGCCGCACTGCAAGGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCGACGCATTCGC < 2:1073823/150‑1 TGGCCGCACTGCAAGGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATGGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCGACGCATTCGC < 2:416017/150‑1 GCCGCACTGCAAGGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCGACGCATTCGCGG < 1:1960389/150‑1 GCCGCACTGCAAGGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCGACGCATTCGCGG < 1:567670/150‑1 GCCGCACTGCAAGGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATAGTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCGACGCATTCGCGG < 1:1574034/150‑1 CCGCACTGCAAGGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCGACGCATTCGCGGG < 2:2840305/150‑1 CAAGGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCGACGCATTCGCGGGTAAACCCG > 2:2746288/1‑150 GGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCGACGCATTCGCGG < 2:1814098/138‑1 GGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCGACGCATTCGCGG > 1:1814098/1‑138 AACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCGACGCATTCGCGG > 1:1352859/1‑78 AACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCGACGCATTCGCGG < 2:1352859/78‑1 CTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCGACGCATTCGCGGG < 2:2087316/63‑1 CTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCGACGCATTCGCGGG > 1:2087316/1‑63 CCCGCGAATGCGTCA‑TTGAATTTGCCGACGCATTCGCGGGTAAACCCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGG > 2:1544882/1‑119 CCCGCGAATGCGTCA‑TTGAATTTGCCGACGCATTCGCGGGTAAACCCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGG < 1:1544882/119‑1 CCGCGAATGCG‑TCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACG < 1:272417/117‑1 CCGCGAATGCG‑TCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACG > 2:272417/1‑117 CCGCGAATGCG‑TCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGCCGG > 2:1147372/1‑150 GCGAATGCGTCA‑TTGAATTTGCCGACGCATTCGCGGGTAAACCCGCGCCCACCCGTCAGCGGAAGCTATAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTT > 2:2416850/1‑139 GCGAATGCG‑TCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCGCCCACCCGTCAGCGGAAGCTATAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTT < 1:2416850/139‑1 tgcgtcaTTGAATTTGCCGACGCATTCGCGGGTAAACCCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTAGCCGGCGTCGTTGTAGGCCGGCGTCACG > 1:1216954/8‑150 GCATTCGCGGGTAAACCCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGCCGGCGTCACGGTCGCTGCATAGCGCTGGTTG > 1:2540094/1‑150 CATTCGCGGGTAAACCCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGCCGGCGTCACGGTCGCTGCATA < 1:1867286/139‑1 CATTCGCGGGTAAACCCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGCCGGCGTCACGGTCGCTGCATA > 2:1867286/1‑139 ATTCGCGGGTAAACCCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGCCGGCGTCACGGTTGCTGGACAGCGCTGGTTGGa > 2:1426438/1‑149 TTCGCGGGTAAACCCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGCCGGCGTCACGGTCGCTGCATAGCGCTGGTTGGcc > 2:646522/1‑148 CGCGGGTAAACCCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGCCGGCGTCACGGTCGCTGCATAGCGCTGGTTGGTCAG < 1:2510218/150‑1 GCGGGTAAACCCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGCCGGCGTCACGGTCGCTGCATAGCGCTGGTTGGTCAGG > 1:150091/1‑150 GGTAAACCCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTT > 2:2872960/1‑104 GGTAAACCCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTT < 1:2872960/104‑1 GTAAACCCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGCCGGCGTCACGGTCGCTGCATAGCGCTGGTTGGTCAGGTTGC < 1:1426438/150‑1 GTAAACCCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGCCGGCGTCACGGTCGCTGCATAGCGCTGGTTGGTCAGGTTGC > 2:1443832/1‑150 AACCCGCGCCCCCCGGTCAGTGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGCCGGCGTCACGGTCGCTGCATAGCGCTGGTTGGTCAGGTTGCGCA > 2:3052759/1‑150 AACCCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGGCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGCCGGCGTCAGGGTCGTTGCATACCGCTGGATAGTCAGGTggagac > 2:1296812/1‑144 ACCCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGCCGGCGTCACGGTCGCTGCATAGCGCTGGTTGGTCAGGTTGCGCAG < 1:1323764/150‑1 CCCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGTCGGCGTCACGGTCGCTGCATAGCGCTGGTTGGTCAGGTTGCGCAGG > 1:177687/1‑150 CCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGGCGGCGTCACGGTCGCTGCATAGCGCTGGTTGGTCAGGTTGCGCAGGT > 1:675613/1‑150 CCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGCCGGCGTCACGGTCGCTGCATAGCGCTGGTTGGTCAGGTTGCGCAGGT > 2:1507558/1‑150 CCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGCCGGCGTCACGGTCGCTGCATAGCGCTGGTTGGTCAGGTTGCGCAGGT > 2:2939657/1‑150 CCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTC > 2:2019656/1‑82 CCGCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTC < 1:2019656/82‑1 GACCAGGCGCTGGCCGCACTGCAAGGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATC‑TTGAATTTGCCGACGCATTCGCGGGTAAACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/614451‑614281‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgcattcgcgggtaaacccgCGCCCACCCGTCAGCGGAAGCTGTAGGAAACCCCGGCATACACGCCAAATCCTTCGCCCGGTGTCGAACGGGCATTGTCCTGGCCGGCGTCGTTGTAGGCCGGCGTCACGGTCGCTGCATAGCGCTGGTTGGTCAGGTTGCGCAGGT < NC_002947/4675357‑4675211 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |