| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 917692 = | 149 (1.300) | 14 (0.130) | 12/222 | NT | 9.9% | intergenic (‑123/+76) | PP_0798/opdC | GGDEF domain‑containing protein/histidine‑specific outer membrane porin D |
| ? | NC_002947 | 917754 = | 119 (1.140) | intergenic (‑185/+14) | PP_0798/opdC | GGDEF domain‑containing protein/histidine‑specific outer membrane porin D | |||||
AGCCAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/917851‑917692‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctcctacaCTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGTCACC > NC_002947/917754‑917902 AGCCAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACC < 1:1969634/150‑1 CCAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATCAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTGCGCGGGTAAACCCG > 1:2931196/1‑150 CAGGGTTATGCGTCGCTCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGCCGGCTTCGCCGCTCTTGGCGGGTAAACGCGC > 2:1471558/1‑150 CAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGC > 1:1037797/1‑150 CAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGC > 1:1379918/1‑150 CAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGC < 1:1816093/150‑1 GGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTC < 2:1043753/150‑1 GTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCC > 1:1818287/1‑99 GTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCC < 2:1818287/99‑1 CCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTC > 1:2584977/1‑89 CCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTC < 2:2584977/89‑1 TGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCA > 1:366803/1‑120 TGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCA < 2:366803/120‑1 AGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGC > 1:873292/1‑150 TGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATC < 2:1814884/121‑1 TGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATC > 1:1814884/1‑121 CGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGG < 2:873292/150‑1 GGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAA‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCT > 1:1575380/1‑150 GTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGC < 2:3072024/45‑1 GTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGC > 1:3072024/1‑45 CCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGG > 2:2983811/1‑150 CCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGT > 1:959709/1‑121 CCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGT < 2:959709/121‑1 CCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCG > 1:2933400/1‑84 CCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCG < 2:2933400/84‑1 CGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCG > 2:2370245/1‑150 CGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTA < 1:2370245/150‑1 CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCT > 2:238766/1‑150 CTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGA < 1:1846842/150‑1 CTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGA < 2:1816093/150‑1 tcaTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGCGGCATAGCGTACCAGCACCGACAGGTCCTTGAG > 1:3068314/4‑150 TCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAG < 1:2179518/150‑1 CTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTT > 1:909301/1‑145 CTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTT < 2:909301/145‑1 TACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGG > 2:212085/1‑112 TACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGG < 1:212085/112‑1 ACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGTCA > 2:2886495/1‑150 ACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGTCA < 1:254654/150‑1 ACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGTCA > 1:1233859/1‑150 ACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTG > 2:730257/1‑72 ACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTG < 1:730257/72‑1 CACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGTCAC > 1:1995477/1‑150 CACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGTCAC < 1:1531937/150‑1 CACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTC < 2:1849067/67‑1 CACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTC > 1:1849067/1‑67 ACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGTCACC > 2:2935424/1‑150 AGCCAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/917851‑917692‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctcctacaCTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGTCACC > NC_002947/917754‑917902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |