| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1570443 = | 58 (0.510) | 8 (0.090) | 8/192 | NT | 20.9% | intergenic (+9/‑179) | pcaF‑I/pcaT | beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease |
| ? | NC_002947 | 1570521 = | 15 (0.170) | intergenic (+87/‑101) | pcaF‑I/pcaT | beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease | |||||
GGTTTACTCCTGGAGGGTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1570617‑1570443‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttccccgcgaagaggccTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCAGCAAGCGCATCTTC > NC_002947/1570521‑1570669 GGTTTACTCCTGGAGGGTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTG < 2:1848637/150‑1 TCCTGTAGGGTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTCGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTCATTGCGTGGATCCCTGTTGGAGCGGG < 2:1293254/150‑1 TCCTGGAGGGTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGG < 2:1417697/150‑1 GAGGGTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCC < 2:1692114/150‑1 GGTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCG < 2:1757297/150‑1 CTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTG > 1:848666/1‑111 CTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTG < 2:848666/111‑1 TCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCC > 1:2653118/1‑113 TCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCC < 2:2653118/113‑1 ATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGG > 1:2575383/1‑96 ATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGG < 2:2575383/96‑1 CTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGCGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACAAGT‑GTGTTACTAGGTATGTCTAGAACTACC > 2:2489391/1‑150 TCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GT < 1:2525127/124‑1 TCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GT > 2:2525127/1‑124 GCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCC < 2:2798726/69‑1 GCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCC > 1:2798726/1‑69 GCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCG < 1:222168/49‑1 GCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCG > 2:222168/1‑49 CCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAG > 2:1155957/1‑107 CCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAG < 1:1155957/107‑1 CCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAG > 1:611181/1‑150 GCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGAC > 1:1393193/1‑70 GCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGAC < 2:1393193/70‑1 GGAGCGGGCTTCCCCGCGAAGAGGCCTCTCGTTTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGG > 1:79835/1‑150 GAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGC < 1:1848637/150‑1 GAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGC > 2:1988424/1‑150 AGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGG > 2:1526762/1‑83 AGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGG < 1:1526762/83‑1 GCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGA > 2:303880/1‑150 GCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGACGAA > 1:556159/1‑150 GCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAG < 1:300456/87‑1 GCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAG > 2:300456/1‑87 CCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGAGAAGAACGCAG > 1:1669592/1‑150 CCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCAGC > 1:1889574/1‑150 CCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTA < 2:301125/131‑1 CCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTA > 1:301125/1‑131 CCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAA < 2:2499969/124‑1 CCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAA > 1:2499969/1‑124 CCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAG > 1:759680/1‑101 CCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAG < 2:759680/101‑1 GAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCAG < 1:2679041/145‑1 GAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCAG > 2:2679041/1‑145 AGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATTG‑GGAAGGTGTCGTATGACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCAGCAAGCGCAT < 2:79835/150‑1 AGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCC > 2:1976246/1‑103 AGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCC < 1:1976246/103‑1 GCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCAGCAAGCGCATCT > 1:290276/1‑150 GCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCAGCAAGCGCATCT > 1:1862752/1‑150 GCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGCAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCAGCAAGCGCATCT > 1:754241/1‑150 CTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACATAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCAGCAAGCGCATCTTC > 1:328938/1‑150 GGTTTACTCCTGGAGGGTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1570617‑1570443‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttccccgcgaagaggccTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGT‑GTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCAGCAAGCGCATCTTC > NC_002947/1570521‑1570669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |