| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1621649 = | 130 (1.140) | 7 (0.060) | 6/232 | NT | 5.4% | coding (521/1392 nt) | PP_1421 | sensor histidine kinase TctE |
| ? | NC_002947 | 1621671 = | 123 (1.130) | coding (543/1392 nt) | PP_1421 | sensor histidine kinase TctE | |||||
TGCACCTGCACCACCGGCAACGCTCGCAAGTCGTCCGGCTGGCGTTCTTCCACCGCTGTGCGAAGGCGCTCCAACGGCCGCAACGCGGCACTCACGGCAAACCACACCATCACCAACGCCCCCAGTGCCAGCATACCCAGGCGCAGCAGGGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1621802‑1621649‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtatGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCG > NC_002947/1621671‑1621818 TGCACCTGCACCACCGGCAACGCTCGCAAGTCGTCCGGCTGGCGTTCTTCCACCGCTGTGCGAAGGCGCTCCAACGGCCGCAACGCGGCACTCACGGCAAACCACACCATCACCAACGCCCCCAGTGCCAGCATACCCAGGCGCAGCAGG < 1:2461317/150‑1TGCACCTGCACCACCGGCAACGCTCGCAAGTCGTCCGGCTGGCGTTCTTCCACCGCTGTGCGAAGGCGCTCCAACGGCCGCAACGCGGCACTCACGGCAAACCACACCATCACCAACGCCCCCAGTGCCAGCATACCCAGGCGCAGCAGG < 2:1448824/150‑1 GCACCTGCACCACCGGCAACGCTCGCAAGTCGTCCGGCTGGCGTTCTTCCACCGCTGTGCGAAGGCGCTCCAACGGCCGCAACGCGGCACTCACGGCAAACCACACCATCACCAACGCCCCCAGTGCCAGCATACCCAGGCGCAGCAGG > 2:2975765/1‑149 GCACCTGCACCACCGGCAACGCTCGCAAGTCGTCCGGCTGGCGTTCTTCCACCGCTGTGCGAAGGCGCTCCAACGGCCGCAACGCGGCACTCACGGCAAACCACACCATCACCAACGCCCCCAGTGCCAGCATACCCAGGCGCAGCAGG < 1:2975765/149‑1 CCTGCACCACCGGCAACGCTCGCAAGTCGTCCGGCTGGCGTTCTTCCACCGCTGTGCGAAGGCGCTCCAACGGCCGCAACGCGGCACTCACGGCAAACCACACCATCACCAACGCCCCCAGTGCCAGCATACCCAGGCGCAGCAGGGTAT > 1:871558/1‑150 GCAACGCTCGCAAGTCGTCCGGCTGGCGTTCTTCCACCGCTGTGCGAAGGCGCTCCAACGGCCGCAACGCGGCACTCACGGCAAACCACACCATCACCAACGCCCCCAGTGCCAGCATACCCAGGCGCAGCAGG < 2:2439052/134‑1 GCAACGCTCGCAAGTCGTCCGGCTGGCGTTCTTCCACCGCTGTGCGAAGGCGCTCCAACGGCCGCAACGCGGCACTCACGGCAAACCACACCATCACCAACGCCCCCAGTGCCAGCATACCCAGGCGCAGCAGG > 1:2439052/1‑134 CAAGTCGTCCGGCTGGCGTTCTTCCACCGCTGTGCGAAGGCGCTCCAACGGCCGCAACGCGGCACTCACGGCAAACCACACCATCACCAACGCCCCCAGTGCCAGCATACCCAGGCGCAGCAGG < 1:2325328/124‑1 CAAGTCGTCCGGCTGGCGTTCTTCCACCGCTGTGCGAAGGCGCTCCAACGGCCGCAACGCGGCACTCACGGCAAACCACACCATCACCAACGCCCCCAGTGCCAGCATACCCAGGCGCAGCAGG > 2:2325328/1‑124 CAGCATACCCAGGCGCAGCAGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTG > 1:1287114/1‑147 CAGCATACCCAGGCGCAGCAGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTG < 2:1287114/147‑1 CAGCATACCCAGGCGCAGCAGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGGGGgg > 2:220220/1‑148 GCATACCCAGGCGCAGCAGGGTATGCTGGCACTGGGGGCGTTGGTGATG < 2:2540083/49‑1 GCATACCCAGGCGCAGCAGGGTATGCTGGCACTGGCGGCGTTGGTGATG > 1:2540083/1‑49 CATACCCAGGCGCAGCAGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGA > 1:980106/1‑64 CATACCCAGGCGCAGCAGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGA < 2:980106/64‑1 gGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGACCGCCAGCCGGACGACTTGCGAGCGTTGCCGGTGGTGCAGGTGCAGCGCGTGCTGG < 2:2491144/149‑1 GGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTCTGCAGTGAAAGGCGCGGTGCGGCCGTTGGAGCGCCTTCCCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGG < 1:2216559/150‑1 GGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCTGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGC > 1:980302/1‑150 GGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGC > 2:725034/1‑150 GGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGC > 2:980890/1‑150 GGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGC > 2:1087264/1‑150 GGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGC > 1:2915959/1‑150 GGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGC < 2:233876/112‑1 GGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGC > 1:233876/1‑112 ATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCG > 1:2975428/1‑150 TGCACCTGCACCACCGGCAACGCTCGCAAGTCGTCCGGCTGGCGTTCTTCCACCGCTGTGCGAAGGCGCTCCAACGGCCGCAACGCGGCACTCACGGCAAACCACACCATCACCAACGCCCCCAGTGCCAGCATACCCAGGCGCAGCAGGGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1621802‑1621649‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtatGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCG > NC_002947/1621671‑1621818 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |