New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1842839 = | 94 (0.820) | 6 (0.060) | 6/226 | NT | 6.7% | coding (1997/2754 nt) | gacS | sensor protein GacS |
? | NC_002947 | 1842873 = | 80 (0.750) | coding (1963/2754 nt) | gacS | sensor protein GacS |
CCGACCACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1842996‑1842839 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccagcgGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTG > NC_002947/1842873‑1843020 CCGACCACCGAGCAGGCGCTGTACCCCCCGTACCTGCCCTACGGCCATGGCCAGTTGCTGTCCAAGCCCACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAAC > 2:610452/1‑150 CCGACCACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAAC < 2:121095/150‑1 CACCGAGCAGGCGCTGTACCACCCGTACGTTCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCA > 1:2093434/1‑150 cCCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAG < 1:459278/149‑1 ACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCCACGCAACCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAG > 1:2335644/1‑150 ACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAG > 2:1554397/1‑150 ACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAG < 1:2717817/150‑1 ACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCGGGGCGAGGGGAGCAACCCCAACGGCCAG < 1:82660/150‑1 CACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCA < 2:776090/131‑1 CACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCA > 1:776090/1‑131 gatctTCGCCGTCCGCTGGCCGAGGGGAGTAACCCCAACGGCCAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCCGGGGCGTTGGGCAGGTACGGGTGGTA < 1:415634/145‑1 CGCCGTCCGCTGGCCGAGGGGAGTAACCCCAACGGCCAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGATGCCAGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGatc > 2:415634/1‑147 GTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAGC‑GACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCT > 2:2469746/1‑150 GCCGAGGGGAGCAACCCCAACGGCCAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGG < 2:1966431/76‑1 GCCGAGGGGAGCAACCCCAACGGCCAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGG > 1:1966431/1‑76 CCCCAACGGCCAGC‑GACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTAC < 1:2469746/150‑1 CGGCCAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATT < 2:1480429/150‑1 GCCAGCGGACGGCGAGTTTGCACCAGCGCCAGCAAGAGGCGCCGCGGCTTGCGGGTGGAGGTCGGCGTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGG < 2:1164542/150‑1 GCCAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGG > 2:2298070/1‑150 CAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTG < 1:698598/67‑1 CAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTG > 2:698598/1‑67 CAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTG > 2:700222/1‑67 CAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTG < 1:700222/67‑1 AGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCAC > 1:459189/1‑132 AGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCAC < 2:459189/132‑1 AGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAAGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGGCAGCAAATGGCCATGACCATTGGGCAGGTACGTGTGGTACAGCGCCTGCGCGGTGGTCGGACACAGAACGACCCATTGGCgg > 2:345222/1‑148 CGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTG < 2:211059/150‑1 CGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTG < 2:2717817/150‑1 CGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTG < 1:2298070/150‑1 GGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGC > 2:2407926/1‑90 GGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGC < 1:2407926/90‑1 GGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGG < 2:1334772/88‑1 GGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGG > 1:1334772/1‑88 CCGACCACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1842996‑1842839 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccagcgGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTG > NC_002947/1842873‑1843020 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |