New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2582462 = | 111 (0.970) | 6 (0.050) | 7/236 | NT | 5.5% | coding (771/801 nt) | PP_2263 | sugar ABC transporter permease |
? | NC_002947 | 2582485 = | 97 (0.880) | coding (794/801 nt) | PP_2263 | sugar ABC transporter permease |
TCGCTCTACGCAGGGGCGACGCAGTTCAAGCAGGGTCATGCCCAGCAGCAACAGGCCCACAGCGGCGAAGAACAGCGCTGTCGGCAGGGTCCAGGCCATCCACTCCATGCGCTGCCCTCCTCACACCCGGCCCAGGGCGAAGCCCTTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2582612‑2582462 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccGGGTGTGAGGAGGGCAGCGCATGGAGTGGATGGCCTGGACCCTGCCGACAGCGCTGTTCTTCGCCGCTGTGGGCCTGTTGCTGCTGGGCATGACCCTGCTTGAACTGCGTCGCCCCTGCGTAGAGCGACGGGGCTTTTTGCCGCTG > NC_002947/2582485‑2582630 TCGCTCTACGCAGGGGCGACGCAGTTCAAGCAGGGTCATGCCCAGCAGCAACAGGCCCACAGCGGCGAAGAACAGCGCTGTCGGCAGGGTCCAGGCCATCCACTCCATGCGCTGCCCTCCTCACACCCGGCCCAGGGCGAAGCCCTTGGC < 1:2054410/150‑1 CTACGCAGGGGCGACGCAGTTCAAGCAGGGTCATGCCCAGCAGCAACAGGCCCACAGCGGCGAAGAACAGCGCTGTCGGCAGGGTCCAGGCCATCCACTCCATGCGCTGCCCTCCTCACACCCGGCCAAGGGCTTCGCCCTGGGCCGGGT < 1:1163525/150‑1 CTACGCAGGGGCGACGCAGTTCAAGCAGGGTCATGCCCAGCAGCAACAGGCCCACAGCGGCGAAGAACAGCGCTGTCGGCAGGGTCCAGGCCATCCACTCCATGCGCTGCCCTCCTCACACCCGGCCAAGGGCTTCGCCCTGGGCCGGGT < 1:589525/150‑1 ACAGCGGCGAAGAACAGCGCTGTCGGCAGGGTCCAGGCCATCCACTCCATGCGCTGCCCTCCTCACACCCGGCCAAGGGCTTCGCCCTGGGCCGGGTGTGAG < 1:731444/102‑1 ACAGCGGCGAAGAACAGCGCTGTCGGCAGGGTCCAGGCCATCCACTCCATGCGCTGCCCTCCTCACACCCGGCCAAGGGCTTCGCCCTGGGCCGGGTGTGAG > 2:731444/1‑102 GAAGAACAGCGCTGTCGGCAGGGTCCAGGCCATCCACTCCATGCGCTGCCCTCCTCACACCCGGCCAAGGGCTTCGCCCTGGGCCGGGTGTG < 1:1283976/92‑1 GAAGAACAGCGCTGTCGGCAGGGTCCAGGCCATCCACTCCATGCGCTGCCCTCCTCACACCCGGCCAAGGGCTTCGCCCTGGGCCGGGTGTG > 2:1283976/1‑92 GCCCAGGGCGAAGCCCTTGGCCGGGTGTGAGGAGGGCAGCGCATGGAGTGGATGGCCTGGACCCTGCCGACAGCGCTGTTCTTCGCCGCTGTGGGCCTGTTGCTGCTGGGCATGACCCTGCTTGAA < 1:2163953/126‑1 GCCCAGGGCGAAGCCCTTGGCCGGGTGTGAGGAGGGCAGCGCATGGAGTGGATGGCCTGGACCCTGCCGACAGCGCTGTTCTTCGCCGCTGTGGGCCTGTTGCTGATGGGCATGACCCTGCTTGAA > 2:2163953/1‑126 GGCCGGGTGTGAGGAGGGCAGCGCATGGAGTGGATGGCCTGGACCCTGCCGACAGCGCTGTTCTTCGCCGCTGTGGGCCTGTTGCTGCTGGGCATGACCCTGCTTGAACTGCGTCGCCCCTGCGTAGAGCGACGGGGCTTTTTGCCGCTG < 1:1602082/150‑1 TCGCTCTACGCAGGGGCGACGCAGTTCAAGCAGGGTCATGCCCAGCAGCAACAGGCCCACAGCGGCGAAGAACAGCGCTGTCGGCAGGGTCCAGGCCATCCACTCCATGCGCTGCCCTCCTCACACCCGGCCCAGGGCGAAGCCCTTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2582612‑2582462 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccGGGTGTGAGGAGGGCAGCGCATGGAGTGGATGGCCTGGACCCTGCCGACAGCGCTGTTCTTCGCCGCTGTGGGCCTGTTGCTGCTGGGCATGACCCTGCTTGAACTGCGTCGCCCCTGCGTAGAGCGACGGGGCTTTTTGCCGCTG > NC_002947/2582485‑2582630 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |