| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3070499 | 115 (1.000) | 11 (0.100) | 8/230 | NT | 9.5% | intergenic (+24/‑330) | aldB‑II/pqqD‑II | aldehyde dehydrogenase/coenzyme PQQ synthesis protein D |
| ? | NC_002947 | = 3070561 | 101 (0.940) | intergenic (+86/‑268) | aldB‑II/pqqD‑II | aldehyde dehydrogenase/coenzyme PQQ synthesis protein D | |||||
CGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3070345‑3070499‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggctCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGAGCGGGCAAGCCCGCGAAGGCCGCGACGCGGTTTAGAAGAAGCCCAGCGGATTGATGTCGTAGCTCACCAGCAGGTTCTTGGTCTGCTGATAATG < NC_002947/3070561‑3070413 CGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGC < 2:3043127/150‑1 GCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCG > 2:2377202/1‑150 CATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGG < 2:1202156/150‑1 ATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGG > 2:1055863/1‑150 TTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGG > 1:131693/1‑142 TTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGG < 2:131693/142‑1 GGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGTTTATTCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCAAGCCCGCgaa < 1:658626/150‑4 CCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGT < 1:1759392/150‑1 TGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGAGCGG < 1:522462/150‑1 CCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGAGCGGGCAAGCCC < 1:1406549/141‑1 CCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGAGCGGGCAAGCCC > 2:1406549/1‑141 CAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCAAGCCCGCgaa < 1:2121162/83‑4 CAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCAAGCCCGCgaa > 2:2121162/1‑80 GAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTTGCGGGCTCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGT > 1:1343747/1‑121 GAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTTGCGGGCTCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGT < 2:1343747/121‑1 CTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGA > 2:2271797/1‑89 CTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGA < 1:2271797/89‑1 GGGCTCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGAGCGGGCAAGCCCGCGAAGGCCGCGACGCGGTTTAGAAGAAGCCCAGCGGATTGATGTCGTAGCTCACCAGCAGGTTCTTGGTCTGCTGAT > 2:2936724/1‑150 GCTCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGAGCGGGCAAGCCCGCGAAGGCCGCGACGCGGTTTAGAAGAAGCCCAGCGGATTGATGTCGTAGCTCACCAGCAGGTTCTTGGTCTGCTGATAA > 2:2578476/1‑150 CTCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGAGCGGGCAAGCCCGCGAAGGCCGCGACGCGGTTTAGAAGAAGCCCAGCGGATTGATGTCGTAGCTCACCAGCAGGTTCTTGGTCTGCTGATAAT < 1:268979/150‑1 TCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGAGCGGGCAAGCCCGCGAAGGCCGCGACGCGGTTTAGAAGAAGCCCAGCGGATTGATGTCGTAGCTCACCAGCAGGTTCTTGGTCTGCTGATAATG > 1:742152/1‑150 TCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGAGCGGGCAAGCCCGCGAAGGCCGCGACGCGGTTTAGAAGAAGCCCAGCGGATTGATGTCGTAGCTCACCAGCAGGTTCTTGGTCTGCTGATAATG > 2:1590233/1‑150 TCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGAGCGGGCAAGCCCGCGAAGGCCGCGACGCGGTTTAGAAGAAGCCCAGCGGATTGATGTCGTAGCTCACCAGCAGGTTCTTGGTCTGCTGATAATG > 2:2523620/1‑150 TCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGAGCGGGCAAGCCCGCGAAGGCCGCGACGCGGTTTAGAAGAAGCCCAGCGGATTGATGTCGTAGCTCACCAGCAGGTTCTTGGTCTGCTGATAATG < 2:2793266/150‑1 TCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGAGCGGGCAAGCCCGCGAAGGCCGCGACGCGGTTTAGAAGAAGCCCAGCGGATTGATGTCGTAGCTCACCAGCAGGTTCTTGGTCTGCTGATAATG < 2:358203/150‑1 TCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGAGCGGGCAAGCCCGCGAAGGCCGCGACGCGGTTTAGAAGAAGCCCAGCGGATTGATGTCGTAGCTCACCAGCAGGTTCTTGGTCTGC > 1:4239/1‑142 TCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGAGCGGGCAAGCCCGCGAAGGCCGCGACGCGGTTTAGAAGAAGCCCAGCGGATTGATGTCGTAGCTCACCAGCAGGTTCTTGGTCTGC < 2:4239/142‑1 TCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGAGCGGGCAAGCCCGCGAAGGCCGCGACGCGGTTTAGAAGAAGCCCAGCGGATT < 1:715407/108‑1 TCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGAGCGGGCAAGCCCGCGAAGGCCGCGACGCGGTTTAGAAGAAGCCCAGCGGATT > 2:715407/1‑108 CGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3070345‑3070499‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggctCGCCCGCCCCCACAGGTTCTTCACCGGTTCTGGAACCAGCGGTGAACCTGTGGGAGCGGGCAAGCCCGCGAAGGCCGCGACGCGGTTTAGAAGAAGCCCAGCGGATTGATGTCGTAGCTCACCAGCAGGTTCTTGGTCTGCTGATAATG < NC_002947/3070561‑3070413 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |