| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3251535 | 114 (1.000) | 8 (0.070) | 6/242 | NT | 6.6% | coding (332/675 nt) | ureF | urease accessory protein |
| ? | NC_002947 | = 3251577 | 114 (1.000) | coding (374/675 nt) | ureF | urease accessory protein | |||||
GCCGGTGCTGGCGCGTCTGTACCACGCCTGCCAGGCTAAAGACGCCGAAGCGTTCGGCCACTGGAGTCGGTTCTTGCTGGCCAACCGCGAAACCGCCGAGCTGCGCCTGGAAGAACAGCAGCGCGGCGCAGCGCTGGCGCGGTTGCTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3251386‑3251535‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGGCTGGCGCGCCAGGCCGGTGCCTGGCCCAGTTGCCAGCCGTCGAGCAACCGCGCCAGCGCTGCGCCGCGCTGCTGTTCTTCCAGGCGCAGCTCGGCGGTTTCGCGGTTGGCCAGCAAGAACCGACTCCAGTGGCCGAACGCTTCGGC < NC_002947/3251577‑3251429 GCCGGTGCTGGCGCGTCTGTACCACGCCTGCCAGGCTAAAGACGCCGAAGCGTTCGGCCACTGGAGTCGGTTCTTGCTGGCCAACCGCGAAACCGCCGAGCTGCGCCTGGAAGAACAGCAGCGCGGCGCAGCGCTGGCGCGGTTGCTCGA > 2:1845441/1‑150GCCGGTGCTGGCGCGTCTGTACCACGCCTGCCAGGCTAAAGACGCCGAAGCGTTCGGCCACTGGAGTCGGTTCTTGCTGGCCAACCGCGAAACCGCCGAGCTGCGCCTGGAAGAACAGCAGCGCGGCGCAGCGCTGGCGCGGTTGCTCGA > 1:2547228/1‑150GCCGGTGCTAGCACGTCTGTACCACGCCTGCCAGGCTAAAGACGCCGAAGCGTTCGGCCACTGGAGTCGGTTCTTGCTGGCCAACCGCGAAACCGCCGAGCTGCGCCTGGAAGAACAGCAGCGCGGCGCAGCGCTGGCGCGGTTGCTCGA > 2:118805/1‑150 CAGGCTAAAGACGCCGAATCGTTCGGCCACTGGAGGCGGTCCTTGCTGGCCAACCGCGAAACCGCCGAGCTGCGCCTGGAAGAACAGCAGCGCGGCGCAGCGCTGGCGCGGTTGCTCGAACGCTGGCGCACCAGGCCGGTGCCTGGCCCA > 1:2646459/1‑150 CAGGCTAAAGACGCCGAAGCGTTCGGCCACTGGAGTCGGTTCTTGCTGGCCAACCGCGAAACCGCCGAGCTGCGCCTGGAAGAACAGCAGCGCGGCGCAGCGCTGGCGCGGTTGCTCGAAGGCTGGCGCGCCAGGCCGGTGCCTGGCCCA > 1:1114845/1‑150 GCCGAAGCGTTCGGCCACTGGAGTCGGTTCTTGCTGGCCAACCGCGAAACCGCCGAGCTGCGCCTGGAAGAACAGCAGCGCGGCGCAGCGCTGGCGCGGTTGCTCGAAGGCTGGCGCGCCAGGCCGGTGCCTGGCCCAGTTGCCAGCCGT < 2:1114845/150‑1 GCCGAAGCGTTCGGCCACTGGAGTCGGTTCTTGCTGGCCAAACGCCAAACCGACGAGCTGCGCCTGGAAGAACAGCAGCGCGGCGCAGCGCTGGCGCGGTTGCTCGAAGGCTGGCGCGCCAGGCCGGTGCCTGGCCCAGTTGCCAGCCGT < 2:2646459/150‑1 CCGAAGCGTTCGGCCACTGGAGTCGGTTCTTGCTGGCCAACCGCGAAACCGCCGAGCTGCGCCTGGAAGAACAGCAGCGCGGCGCAGCGCTGGCGCGGTTGCTCGAAGGCTGGCGCGCCAGGCCGGTGCCTGGCCCAGTTGCCAGCCGTC < 1:2074571/150‑1 TCGGCCACTGGAGTCGGTTCTTGCTGGCCAACCGCGAAACCGCCGAGCTGCGCCTGGAAGAACAGCAGCGCGGCGCAGCGCTGGCGCGGTTGCTC‑AAGGCTGGCGCGCCAGGCCGGTGCCTGGCCCAGTTGCCAGCCGTCGAGCAACCGC < 2:814154/150‑1 CAACCGCGAAACCGCCGAGCTGCGCCTGGAAGAACAGCAGCGCGGCGCAGCGCTGGCGCGGTTGCTCGAAGGCTGGCGCGCCAGGCCGGTGCCTGGCCCAGTTGCCAGCCGTCGA > 1:260573/1‑115 CAACCGCGAAACCGCCGAGCTGCGCCTGGAAGAACAGCAGCGCGGCGCAGCGCTGGCGCGGTTGCTCGAAGGCTGGCGCGCCAGGCCGGTGCCTGGCCCAGTTGCCAGCCGTCGA < 2:260573/115‑1 TCGACGGCTGGCGCGCCAGGCCGGTGCCTGGCCCAGTTGC < 2:1006478/40‑1 TCGACGGCTGGCGCGCCAGGCCGGTGCCTGGCCCAGTTGC > 1:1006478/1‑40 AAGGCTGGCGCGCCAGGCCGGTGCCTGGCCCAGTTGCCAGCCGTCGAGCAACCGCGCCAGCGCTGCGCCGCGCTGCTGTTCTTCCAGGCGCAGCTCGGCGGTTTCGCGGTTGGCCAGCACGAACCGACTCCAGTGGCCGAACGCTTCGG < 1:1620160/149‑1 AAGGCTGGCGCGCCAGGCCGGTGCCTGGCCCAGTTGCCAGCCGTCGAGCAACCGCGCCAGCGCTGCGCCGCGCTGCTGTTCTTCCAGGCGCAGCTCGGCGGTTTCGCGGTTGGCCAGCAAGAACCGACTCCAGTGGCCGAACGCTTCGGC < 2:2217110/150‑1 AAGGCTGGCGCGCCAGGCCGGTGCCTGGCCCAGTTGCCAGCCGTCGAGCAACCGCGCCAGCGCTGCGCCGCGCTGCTGTTCTTCCAGGCGCAGCTCGGCGGTTTCGCGGTTGGCCAGCAAGAACCGACTCCAGTGGCCGAACGCTTCGGC < 2:2790668/150‑1 AAGGCTGGCGCGCCAGGCCGGTGCCTGGCCCAGTTGCCAGCCGTCGAGCAACCGCGCCAGCGCTGCGCCGCGCTGCTGTTCTTCCAGGCGCAGCTCGGCGGTTTCGCGGTTGGCCAGCAAGAACCGACTCCAGTGGCCGAACGCTTCGG > 2:1620160/1‑149 AAGGCTGGCGCGCCAGGCCGGTGCCTGGCCCAGTTGCCAGCCGTCGAGCAACCGCGCCAGCGCTGCGCCGCGCTGCTGTTCTTCCAGGCGCAGCTCGGCGGTTTCGCGGTTGGCCAGCAAGAACCGACTC < 1:961865/130‑1 AAGGCTGGCGCGCCAGGCCGGTGCCTGGCCCAGTTGCCAGCCGTCGAGCAACCGCGCCAGCGCTGCGCCGCGCTGCTGTTCTTCCAGGCGCAGCTCGGCGGTTTCGCGGTTGGCCAGCAAGAACCGACTC > 2:961865/1‑130 AAGGCTGGCGCGCCAGGCCGGTGCCTGGCCCAGTTGCCAGCCGTCGAGCAACCGCGCCAGCGCTGCGCCGCGCTGCCGTTCTTCCAGGCGCAGCTCGGCGGTTTCGCGGTTGGCCAGCAAGAACCGACTCCAGTGGCCGAACGCTTCGGC > 2:2936586/1‑150 GCCGGTGCTGGCGCGTCTGTACCACGCCTGCCAGGCTAAAGACGCCGAAGCGTTCGGCCACTGGAGTCGGTTCTTGCTGGCCAACCGCGAAACCGCCGAGCTGCGCCTGGAAGAACAGCAGCGCGGCGCAGCGCTGGCGCGGTTGCTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3251386‑3251535‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGGCTGGCGCGCCAGGCCGGTGCCTGGCCCAGTTGCCAGCCGTCGAGCAACCGCGCCAGCGCTGCGCCGCGCTGCTGTTCTTCCAGGCGCAGCTCGGCGGTTTCGCGGTTGGCCAGCAAGAACCGACTCCAGTGGCCGAACGCTTCGGC < NC_002947/3251577‑3251429 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |