| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3352188 = | 117 (1.020) | 8 (0.070) | 7/232 | NT | 7.6% | intergenic (+35/+107) | PP_2947/PP_2948 | transcriptional regulator MvaT/GntR family transcriptional regulator |
| ? | NC_002947 | 3352244 = | 83 (0.760) | intergenic (+91/+51) | PP_2947/PP_2948 | transcriptional regulator MvaT/GntR family transcriptional regulator | |||||
GCTGATGCCAAAATTTACGAAGTATTGAAACGGACACTGAGCGCTTAGTGGCGAAACTTCCTGTTTAACCACGTCAGCTCATTCCGCCCACCCACGATGAACGCCCTGTTTCGAGGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3352342‑3352188‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgttCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGCGACATTGAAACGGAGGAAATCACCCGCAGCCATCGACTGGC > NC_002947/3352244‑3352392 GCTGATGCCAAAATTTACGAAGTATTGAAACGGACACTGAGCGCCTAGTGGCGAAACTTCCTGTTTAACCACGTCAGCTCATTCCGCACACCCACGATGAACGCCCTGTTTCGAGGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAG < 2:2214458/150‑1 GATGCCAAAATTTACGAAGTATTGAAACGGACACTGAGCGCTTAGTGGCGAAACTTCCTGTTTAACCACGTCAGCTCATTCCGCCCACCCACGATGAACGCCCTGTTTCGAGGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAGGCG > 2:865725/1‑150 GCGAAACTTCCTGTTTAACCACGTCAGCTCATTCCGCCCACCCACGATGAACGCCCTGTTTCGAGGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAGG < 1:1625800/101‑1 GCGAAACTTCCTGTTTAACCACGTCAGCTCATTCCGCCCACCCACGATGAACGCCCTGTTTCGAGGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAGG > 2:1625800/1‑101 TGTTTAACCACGTCAGCTCATTCCGCCCACCCACGATGAACGCCCTGTTTCGAGGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAGG > 1:3056375/1‑90 TGTTTAACCACGTCAGCTCATTCCGCCCACCCACGATGAACGCCCTGTTTCGAGGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAGG < 2:3056375/90‑1 CCACGATGAACGCCCTGTTTCGAGGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAG > 1:2729645/1‑120 CCACGATGAACGCCCTGTTTCGAGGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAG < 2:2729645/120‑1 CCACGATGAACGCCCTGTTTCGAGGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAG > 2:600532/1‑107 CCACGATGAACGCCCTGTTTCGAGGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAG < 1:600532/107‑1 CTGTTTCGAGGAGGCGACGCTGTCGCTTCCTCGAAAAAG‑‑‑‑‑GGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTG > 2:2865560/1‑150 AGGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGC > 1:2397022/1‑150 GCTGTCGCTTCCTCGAAAAAGAACAAGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGCGACATTGAAA > 1:2208991/1‑150 CGCTTCCTCGAAAAAGAACAAGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGCGACATTGAAACGGAG < 2:2397022/150‑1 GTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGCGACATTGAAACGGAGGAAA > 1:597231/1‑130 GTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGCGACATTGAAACGGAGGAAA < 2:597231/130‑1 TCATCGTTGGTGGGCGGAATGAGCTGACTTGGTTAAACCGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCATAAATTTTGCCATCAGCCGATTGGGCGACATTGAACCGGAGGAAATCACCCCCAGCCATCGACTGGC < 2:1210599/150‑1 TCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGCGACATTGAAACGGAGGAAATCACCCGCAGCCATCGACTGGC < 1:2865560/150‑1 TCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGCGACATTGAAACGGAGGAAATCACCCGCAGCCATCGACTGGC < 1:2728324/150‑1 GCTGATGCCAAAATTTACGAAGTATTGAAACGGACACTGAGCGCTTAGTGGCGAAACTTCCTGTTTAACCACGTCAGCTCATTCCGCCCACCCACGATGAACGCCCTGTTTCGAGGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3352342‑3352188‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgttCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGCGACATTGAAACGGAGGAAATCACCCGCAGCCATCGACTGGC > NC_002947/3352244‑3352392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |