New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4224384 =	67 (0.590)	18 (0.160)	17/242	NT	21.3%	intergenic (‑452/+369)	PP_3703/PP_3704	hypothetical protein/hypothetical protein
	?	NC_002947	4536248 =	NA (NA)					intergenic (+731/‑84)	PP_4022/PP_4024	hypothetical protein/transposase

CACCTAGGTTTATTTTCCGCGGGGTTTTCCCGCATCGCTCCGCTTATCACGTATCTGGCCGTCTTTGTTACGGGAGCGAGGTTGTTCCCCGCCGCCAGGCTTAGGGACATTTACGTTTGGATTGATAGGGCGACGATCTGTCATACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4224530‑4224384 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTCGAAA  >  NC_002947/4536248‑4536396                                                                                                                                                                                                                                                                                                          CACCTAGGTTTATTTTCCGCGGGGTTTTCCCGCATCGCTCCGCTTATCACGTATCTGGCCGTCTTTGTTACGGGAGCGAGGTTGTTCCCCGCCGCCAGGCTTAGGGACATTTACGTTTGGATTGATAGGGCGACGATCTGTCATACGTAA                                                                                                                                                    <  2:2524969/150‑1   CCTAGGTTTATTTTCCGCGGGGTTTTCCCGCATCGCTCCGCTTATCACGTATCTGGCCGTCTTTGTTACGGGAGCGAGGTTGTTCCCCGCCGCCAGGCTTAGGGACATTTACGTTTGGATTGATAGGGCGACGATCTGTCATACGTAAGG                                                                                                                                                  <  2:944053/150‑1    CTAGGTTTATTTTCCGCGGGGTTTTCCCGCATCGCTCCGCTTATCACGTATCTGGCCGTCTTTGTTACGGGAGCGAGGTTGTTCCCCGCCGCCAGGCTTAGGGACATTTACGTTTGGATTGATAGGGCGACGATCTGTCATACGTAAGGG                                                                                                                                                 >  1:586957/1‑150         TTTATTTTCCGCGGGGTTTTCCCGCATCGCTCCGCTTATCACGTATCTGGCCGTCTTTGTTACGGGAGCGAGGTTGTTCCCCGCCGCCAGGCTTAGGGACATTTACGTTTGGATTGATAGGGCGACGATCTGTCATACGTAAGGGATCCA                                                                                                                                            <  2:586957/150‑1                    CGGGGTTTTCCCGCATCGCTCCGCTTATCACGTATCTGGCCGTCTTTGTTACGGGAGCGAGGTTGTTCCCCGCCGCCAGGCTTAGGGACATTTACGTTTGGATTGATAGGGCGACGATCTGTCATACGTAAGGGATCCATCATCCCCACA                                                                                                                                 >  1:2121706/1‑150                          TTTCCCGCATCGCTCCGCTTATCACGTATCTGGCCGTCTTTGTTACGGGAGCGAGGTTGTTCCCCGCCGCCAGGCTTAGGGACATTTACGTTTGGATTGATAGGGCGACGATCTGTCATACGTAAGGGATCCATCATCCCCACATTCCAA                                                                                                                           <  2:358698/150‑1                                                     ATCTGGCCGTCTTTGTTACGGGAGCGAGGTTGTTCCCCGCCGCCAGGCTTAGGGACATTTACGTTTGGATTGATAGGGCGACGATCTGTCATACGTAAGGGATCCATCATCCCCACATTCCAACCGTACACCTGATTCCCGATGCTGTGC                                                                                                <  1:1239709/150‑1                                                                    TTACGGGAGCGAGGTTGTTCCCCGCCGCCAGGCTTAGGGACATTTACGTTTGGATTGATAGGGCGACGATCTGTCATACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCT                                                                                 <  1:1631687/150‑1                                                                    TTACGGGAGCGAGGTTGTTCCCCGCCGCCAGGCTTAGGGACATTTACGTTTGGATTGATAGGGCGACGATCTGTCATACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCT                                                                                 <  2:2121706/150‑1                                                                             CGAGGTTGTTCCCCGCCGCCAGGCTTAGGGACATTTACGTTTGGATTGATAGGGCGACGATCTGTCATACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGC                                                                        <  2:563676/150‑1                                                                              GAGGTTGTTCCCCGCCGCCAGGCTTAGGGACATTTACGTTTGGATTGATAGGGCGACGATCTGTCATACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCC                                                                       >  1:2965816/1‑150                                                                                               CCAGGCTTAGGGACATTTACGTTTGGATTGATAGGGCGACGATCTGTCATACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCG                                                      >  1:86344/1‑150                                                                                                     TTAGGGACATTTACGTTTGGATTGATAGGGCGACGATCTGTCATACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCC                                                                                            >  1:2788819/1‑106                                                                                                     TTAGGGACATTTACGTTTGGATTGATAGGGCGACGATCTGTCATACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCC                                                                                            <  2:2788819/106‑1                                                                                                         GGACATTTACGTTTGGATTGATAGGGCGACGATCTGTCATACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGT                                            >  2:378113/1‑150                                                                                                              TTTACGTTTGGATTGATAGGGCGACGATCTGTCATACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAA                                       <  2:2628489/150‑1                                                                                                                   cTTTGGATTGATAGGGCGACGATCTGTCATACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAG                                                                             <  2:806709/106‑1                                                                                                                   GTTTGGATTGATAGGGCGACGATCTGTCATACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAG                                                                             >  1:806709/1‑107                                                                                                                      TGGATTGATAGGGCGACGATCTGTCATACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTAC                               <  2:86344/150‑1                                                                                                                                       GATCTGTCATACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGT              <  2:294115/150‑1                                                                                                                                               ATACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTC      >  1:674327/1‑150                                                                                                                                                 ACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAA                                        <  1:464031/114‑1                                                                                                                                                 ACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAA                                        >  2:464031/1‑114                                                                                                                                                  CGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTCGAA   >  2:1436463/1‑150                                                                                                                                                  CGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTCGAA   >  1:2143494/1‑150                                                                                                                                                   GTAAGGGCTCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTCGAAA  <  1:1666341/150‑1                                                                                                                                                   GTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTCGAAA  >  2:1628023/1‑150                                                                                                                                                   GTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTCGAAA  <  2:775584/150‑1                                                                                                                                                   GTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTCGAAA  <  2:972063/150‑1                                                                                                                                                   GTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTCGAAA  <  2:2393294/150‑1                                                                                                                                                   GTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTCGAAA  <  1:611043/150‑1                                                                                                                                                   GTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTCGAAA  <  1:1628023/150‑1                                                                                                                                                   GTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTCGAAA  <  1:1321503/150‑1                                                                                                                                                   GTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGCCTACCTCTACCCCAAGCCCGTGGACTTTCGAAA  <  1:861506/150‑1                                                                                                                                                                                                                                                                                                          CACCTAGGTTTATTTTCCGCGGGGTTTTCCCGCATCGCTCCGCTTATCACGTATCTGGCCGTCTTTGTTACGGGAGCGAGGTTGTTCCCCGCCGCCAGGCTTAGGGACATTTACGTTTGGATTGATAGGGCGACGATCTGTCATACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4224530‑4224384 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTCGAAA  >  NC_002947/4536248‑4536396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.