| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4611727 | 101 (0.880) | 7 (0.060) | 5/230 | NT | 6.6% | intergenic (+643/‑1464) | hcpC‑II/PP_4084 | hemolysin‑coregulated protein/hypothetical protein |
| ? | NC_002947 | = 4611747 | 104 (0.960) | intergenic (+663/‑1444) | hcpC‑II/PP_4084 | hemolysin‑coregulated protein/hypothetical protein | |||||
ACCATCAGGTGCGCGAATTCTGCGTTCAGGCCGGTGAGACGGACTTGGCGTTCATCGCCCGCCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4611574‑4611727‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcctTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCCAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCTG < NC_002947/4611747‑4611600 ACCATCAGGTGCGCGAATTCTGCGTTCAGGCCGGTGAGACGGACTTGGCGTTCATCGCCCGCCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCG < 2:2487526/150‑1 CATCAGGTGCGCGAATTCTGCGTTCAGGCCGGTGAGACGGACTTGGCGTTCATCGCCCGCCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGC < 2:2667832/150‑1 CATCAGGTGCGCGAATTCTGCGTTCAGGCCGGTGAGACGGACTTGGCGTTCATCGCCCGCCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGC > 2:1399025/1‑150 GCGAATTCTGCGTTCAGGCCGGTGAGACGGACTTGGCGTTCATCGCCCGCCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCCTTGATGGCG > 1:1839532/1‑150 AGGCCGGTGAGACGGACTTGGCGTTCATCGCCCGCCTTGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCCTTGATGGCGCCATGGCTGATCAGG < 1:2505906/150‑1 GCCGGTGAGACGGACTTGGCGTTCATCGCCCGCCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCCTTGATGGCGCCATGGCTGATCAGGCC < 1:1581858/150‑1 GGTGAGACGGACTTGGCGTTCATCGCCCGCCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCCTTGATGGCGCCATGGCTGATCAGGCCGAG < 2:1839532/150‑1 GAGACGGACTTGGCGTTCATCGCCCGCCTTGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCCTTGATGGCGCCATGGCTGATCAGGCCGAGGGA < 2:2869274/150‑1 CCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCC < 2:2852395/92‑1 CCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCC > 1:2852395/1‑92 GCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCCTTGATGGCGCCATGGCTGATCAGGCCGAGG > 1:606771/1‑86 GCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCCTTGATGGCGCCATGGCTGATCAGGCCGAGG < 2:606771/86‑1 GCCTTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTCAACTATGCGCAAAGCGGTATACGAAGCCTTCTTCAGCGGCCAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCC < 1:375468/150‑1 CCTTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCCAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCT < 1:2822614/150‑1 CTTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCCAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCTG > 1:1197155/1‑150 CTTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCCAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCTG > 2:318977/1‑150 CTTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCA < 1:762979/73‑1 CTTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCA > 2:762979/1‑73 TTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCCAGGCGGG < 2:1236939/118‑1 TTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCCAGGCGGG > 1:1236939/1‑118 ACCATCAGGTGCGCGAATTCTGCGTTCAGGCCGGTGAGACGGACTTGGCGTTCATCGCCCGCCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4611574‑4611727‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcctTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCCAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCTG < NC_002947/4611747‑4611600 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |