| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5099995 = | 67 (0.590) | 11 (0.120) | 10/194 | NT | 20.3% | intergenic (+33/+120) | PP_4488/phhR | hypothetical protein/sigma‑54 dependent transcriptional regulator |
| ? | NC_002947 | 5100077 = | 33 (0.360) | intergenic (+115/+38) | PP_4488/phhR | hypothetical protein/sigma‑54 dependent transcriptional regulator | |||||
ACAATTGCCAACAAGTTGAGGGATTACTCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5100165‑5099995‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcggccttgtgtcgcgaAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCA > NC_002947/5100077‑5100224 ACAATTGCCAACAAGTTGAGGGATTACTCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGT < 2:1033212/150‑1 CAATTGCCAACAAGTTGAGGGATTACTCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTG < 1:1232796/150‑1 CAATTGCCAACAAGTTGAGGGATTACTCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTG < 2:1466496/150‑1 AATTGCCAACAAGTTGAGGGATTACTCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGG < 1:1249302/150‑1 AATTGCCAACAAGTTGAGGGATTACTCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGG < 2:2879976/150‑1 TTGCCAACAAGTTGAGGGATTACTCGCTTGACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGA < 2:1644388/150‑1 CCAACAAGTTGAGGGATTACTCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCG < 2:50137/150‑1 AACAAGTTGAGGGATTACTCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGC < 1:2553635/150‑1 TTGAGGGATTACTCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTG < 1:1840056/150‑1 TCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGA < 1:1730242/144‑1 TCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGA > 2:1730242/1‑144 GTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGT > 1:113624/1‑100 GTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGT < 2:113624/100‑1 TCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGA < 1:568574/96‑1 TCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGA > 2:568574/1‑96 AAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTT < 2:2438664/102‑1 AAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTT > 1:2438664/1‑102 CCTATCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTG > 1:1213569/1‑66 GCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCC > 2:2343291/1‑150 GCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTT < 1:2343291/150‑1 CCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAAT > 2:2103640/1‑150 CCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCTACAACTCATCCGCCGACTTGGTAAGCGAGGAATCCCTCAACTTGTTGGCAATT > 2:1724074/1‑150 CCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTT > 2:1640766/1‑92 CCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTT < 1:1640766/92‑1 CACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGTAACGCAGTCCCAGGTTCTTTGACCAACAAC < 2:254009/101‑1 CACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGTAACGCAGTCCCAGGTTCTTTGACCAACAAC > 1:254009/1‑101 AGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGT < 2:1326819/138‑1 AGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGATAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGT > 1:1326819/1‑138 GTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTG < 1:2103640/150‑1 CTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCG > 2:618266/1‑150 TGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGC < 2:2341831/84‑1 TGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGC > 1:2341831/1‑84 TGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACT > 2:2723411/1‑150 TGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGT > 1:3020412/1‑116 TGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGT < 2:3020412/116‑1 TGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTC < 1:667655/112‑1 TGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTC > 2:667655/1‑112 TGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATACGCCGACTTGTTAAGCGAG < 2:906636/85‑1 TGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATACGCCGACTTGTTAAGCGAG > 1:906636/1‑85 AGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCC > 2:2901096/1‑87 AGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCC < 1:2901096/87‑1 CCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTTTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCTACTACTGGGAAA > 1:1722417/1‑150 CCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTG > 2:568071/1‑145 CCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTG < 1:568071/145‑1 CCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTT > 1:1635615/1‑126 CCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTT < 2:1635615/126‑1 CTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAAC > 2:587659/1‑150 TTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACT > 1:930587/1‑150 TGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACgc < 2:1249302/150‑3 GTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCC > 1:310565/1‑150 GTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCC < 2:1232796/150‑1 TGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTCATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCC < 1:2969043/150‑1 TGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTATTCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCTAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCC < 1:2489960/150‑1 GCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGT < 1:598452/59‑1 GCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGT > 2:598452/1‑59 CGAAAGGACTGCAACGCAGTCCCCGGGGCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATC > 1:1950051/1‑150 GAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCA > 1:2736078/1‑150 GAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTT > 2:247051/1‑79 GAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTT < 1:247051/79‑1 ACAATTGCCAACAAGTTGAGGGATTACTCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5100165‑5099995‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcggccttgtgtcgcgaAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCA > NC_002947/5100077‑5100224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |