| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5841953 | 111 (0.970) | 7 (0.060) | 7/234 | NT | 5.9% | coding (466/1431 nt) | calB | coniferyl aldehyde dehydrogenase |
| ? | NC_002947 | = 5841968 | 118 (1.070) | coding (481/1431 nt) | calB | coniferyl aldehyde dehydrogenase | |||||
GCGTTCCAGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGACCTGCGCCCTGGCCGCCGGCAACCGGGTCATGCTCAAGCTTAGCGAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5841800‑5841953‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaGGCCCGTCG‑CGGGCGTGGCCTCGCTAAGCTTGAGCATGACCCGGTTGCCGGCGGCCAGGGCGCAGGTCAACGGGCCGATGGCGAGGAACAACGGGTAGTTCCACGGCACGATGACGCCGACCACGCCCAAGGGTTGATAGCGCACCT < NC_002947/5841968‑5841822 GCGTTCCAGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGACCTGCGCCCTGGCCGCCGGCAACCGGGTCATGCTCAAGCTTAGCGAG < 2:1974230/150‑1 CGTTCCAGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGACCTGCGCCCTGGCCGCCGGCAACCGGGTCATGCTCAAGCTTAGCGAGG < 2:1531526/150‑1 GTTCCAGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGACCTGCGCCCTGGCCGCCGGCAACCGGGTCATGCTCAAGCTTAGCGAGGC < 2:525092/150‑1 TTCCAGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGACCTGCGCCCTGGCCGCCGGCAACCGGGTCATGCTCAAGCTTAGCGAGGCC > 1:1629379/1‑150 AGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGACCTGCGCCCTGGCCGCCGGCCACCGGGTCATGCTCAAGCTTAGCGAGGCCccgc > 2:626233/1‑146 CGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGACCTGCGCCCTGGCCGCCGGCAACCGGGTCATGCTCAAGCTTAGCGAGGCCAGGCCCGTCG‑CGGG > 1:526034/1‑150 GGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGACCTGCGCCCTGGCCGCCGGCAACCGGGTCATGCTCAAGCTTAGCGAGGCCAGGCCCGTCG‑CGGGCGTGGC < 2:526034/150‑1 GTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGACCTGCGCCCTGGCCGCCGGCAACCGGGTCATGCTCAAGCTTAGCGAGGCCAGGCCCGTCG‑CGGGCGTGGCC < 2:1934445/150‑1 GGCCGCCGGCAACCGGGTCATGCTCAAGCTTAGCGAGGCCAGGCCCGTCG‑CGGGCGTGGCCTC > 1:2024364/1‑63 GGCCGCCGGCAACCGGGTCATGCTCAAGCTTAGCGAGGCCAGGCCCGTCG‑CGGGCGTGGCCTC < 2:2024364/63‑1 GCTCAAGCTTAGCGAGGCCACGCCCG‑CGACGGGCCTGGCCTCGCTAAGCTTGAGCATGACCCGGTTGCCGGCGGCCAGGGCGCAGGTCAACGGGCCGATGGCGAGGAACAACGGGTAG < 1:1131632/118‑1 GCTCAAGCTTAGCGAGGCCACGCCCG‑CGACGGGCCTGGCCTCGCTAAGCTTGAGCATGACCCGGTTGCCGGCGGCCAGGGCGCAGGTCAACGGGCCGATGGCGAGGAACAACGGGTAG > 2:1131632/1‑118 GGCCAGGCCCGTCG‑CGGGCGTGGCCTCGCTAAGCTTGAGCATGACCCGGTTGCCGGCGGCCAGGGCGCAGGTCAACGGGCCGATGGCGAGGAACAACGGGTAAATGCTCGGCACGATGACGCCGACCACGCCCAAGGGTTGATAGCGCAC > 1:1871667/1‑150 GGCCAGGCCCGTCG‑CGGGCGTGGCCTCGCTAAGATTGAGCGTGACCCGGTTGCCGGCGGCCAGGGCGCAGGTCAACGGGCCGATGGCGAGGAACAACGGGTAGTTCCACGGCACGATGACGCCGACCACGCCCAAGGGTTGATAGCGCAC < 1:2174891/150‑1 CCAGGCCCGTCG‑CGGGCGTGGCCTCGCTAAGCTTGAGCATGACCCGGTTGCCGGCGGCCAGGGCGCAGGTCAACGGGCCGATGGCGAGGAACAACGGGTAGTTCCACGGAAAGATGACGCCGACCACGCCCAAGGGTTGATAGCGCACCT > 2:806014/1‑150 CAGGCCCGTCG‑CGGGCGTGGCCTCGCTAAGCTTGAGCATGACCCGGTTGCCGGCGGCCAGGGCGCAGGTCAACGGGCCGATGGCGAGGAACAACGG < 1:2382922/96‑1 CAGGCCCGTCG‑CGGGCGTGGCCTCGCTAAGCTTGAGCATGACCCGGTTGCCGGCGGCCAGGGCGCAGGTCAACGGGCCGATGGCGAGGAACAACGG > 2:2382922/1‑96 AGGCCCGTCG‑CGGGCGTGGCCTCGCTAAGCTTGAGCATGACCCGGTTGCCGGCGGCCAGGGCGCAGGTCAACGGGCCGATGGCGAGGAACAACGGGTAGTTCCAC > 2:1214274/1‑105 AGGCCCGTCG‑CGGGCGTGGCCTCGCTAAGCTTGAGCATGACCCGGTTGCCGGCGGCCAGGGCGCAGGTCAACGGGCCGATGGCGAGGAACAACGGGTAGTTCCAC < 1:1214274/105‑1 GCGTTCCAGCCGGCCAGCGCACAGGTGCGCTATCAACCCTTGGGCGTGGTCGGCGTCATCGTGCCGTGGAACTACCCGTTGTTCCTCGCCATCGGCCCGTTGACCTGCGCCCTGGCCGCCGGCAACCGGGTCATGCTCAAGCTTAGCGAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5841800‑5841953‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaGGCCCGTCG‑CGGGCGTGGCCTCGCTAAGCTTGAGCATGACCCGGTTGCCGGCGGCCAGGGCGCAGGTCAACGGGCCGATGGCGAGGAACAACGGGTAGTTCCACGGCACGATGACGCCGACCACGCCCAAGGGTTGATAGCGCACCT < NC_002947/5841968‑5841822 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |