New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5877040 =	140 (1.220)	8 (0.090)	7/196	NT	7.1%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5877122 =	97 (1.050)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein

GGATGAAGCGGGGACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5877211‑5877040 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGCGCAA  >  NC_002947/5877122‑5877270                                                                                                                                                                                                                                                                                                                                   GGATGAAGCGGGGACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTG                                                                                                                                                                             <  2:69064/150‑1  GATGAAGCGGGGACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGT                                                                                                                                                                            >  2:3004701/1‑150    TGAAGTGGGGACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAG                                                                                                                                                                          <  1:1013981/150‑1    TGAAGCGGGGACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAG                                                                                                                                                                          >  1:1972957/1‑150          GGGGACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGG                                                                                                                                                                    <  1:2415547/150‑1          GGGGACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGG                                                                                                                                                                    <  2:1057697/150‑1           GGGACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGG                                                                                                                                                                   <  1:3004701/150‑1            GGACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGT                                                                                                                                                                  >  2:285172/1‑150             GACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTT                                                                                                                                                                 >  1:2055617/1‑150              ACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTT                                                                                                                                                                >  2:2781341/1‑150                nATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTAC                                                                                                                                                              >  2:1738103/2‑150                 ATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACC                                                                                                                                                             >  1:1283733/1‑150                  TTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCC                                                                                                                                                            <  1:3024307/150‑1                     ACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCG                                                                                                                                                         >  1:2041732/1‑150                     ACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCG                                                                                                                                                         >  1:749083/1‑150                       CTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAA                                                                                                                                                       <  1:1806286/150‑1                               TGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTA                                                                                                                                                               >  1:2209249/1‑134                               TGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTA                                                                                                                                                               <  2:2209249/134‑1                                                 TGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTA                                                                                                                                                                           >  2:1209631/1‑104                                                 TGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTA                                                                                                                                                                           <  1:1209631/104‑1                                                                                           TTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGT                                                                                                                                                                            <  1:2083492/61‑1                                                                                           TTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGT                                                                                                                                                                            >  2:2083492/1‑61                                                                                                        CCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACA                                                                                                               >  1:1578623/1‑109                                                                                                        CCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACA                                                                                                               <  2:1578623/109‑1                                                                                                        CCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGC                                                                                                                         >  2:2512687/1‑99                                                                                                        CCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGC                                                                                                                         <  1:2512687/99‑1                                                                                                         CGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTTACCAGGTAAATG                                                                            >  1:1694557/1‑143                                                                                                         CGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATG                                                                            <  2:1694557/143‑1                                                                                                          GCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGA                                                                                                                                             <  1:2136444/77‑1                                                                                                          GCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGA                                                                                                                                             >  2:2136444/1‑77                                                                                                                                                     caggGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCC                                                                       >  1:2698505/5‑104                                                                                                                                                     caggGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCC                                                                       <  2:2698505/100‑1                                                                                                                                                         GGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACC                     >  1:2264877/1‑150                                                                                                                                                            GCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCG                                       >  1:792073/1‑129                                                                                                                                                            GCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCG                                       <  2:792073/129‑1                                                                                                                                                            GCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGT                                                                          <  1:1249359/94‑1                                                                                                                                                            GCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGT                                                                          >  2:1249359/1‑94                                                                                                                                                              GGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTG                          <  1:2295384/140‑1                                                                                                                                                              GGGTGTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTG                          >  2:2295384/1‑140                                                                                                                                                                 TTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTC                                               <  1:2283398/116‑1                                                                                                                                                                 TTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTC                                               >  2:2283398/1‑116                                                                                                                                                                  TTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAAC            <  1:171937/150‑1                                                                                                                                                                    ACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACC           <  1:1176565/149‑1                                                                                                                                                                    ACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACC           >  2:1176565/1‑149                                                                                                                                                                     ccgGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCT         >  2:516964/4‑150                                                                                                                                                                      CCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTT        <  1:2201190/150‑1                                                                                                                                                                      CCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTT        >  2:855362/1‑150                                                                                                                                                                      CCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAG                                                                                                          >  2:2515666/1‑52                                                                                                                                                                      CCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAG                                                                                                          <  1:2515666/52‑1                                                                                                                                                                      CCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTACTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATG                                                                            <  1:524460/82‑1                                                                                                                                                                      CCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTACTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATG                                                                            >  2:524460/1‑82                                                                                                                                                                        GCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGC      >  2:2466547/1‑150                                                                                                                                                                        GCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGC      <  1:1990449/150‑1                                                                                                                                                                        GCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGC      >  2:934084/1‑150                                                                                                                                                                          GAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCG                                                                     <  2:2723793/85‑1                                                                                                                                                                          GAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCG                                                                     >  1:2723793/1‑85                                                                                                                                                                            ACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGCGCAA  >  2:1728994/1‑150                                                                                                                                                                                                                                                                                                                                   GGATGAAGCGGGGACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5877211‑5877040 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGCGCAA  >  NC_002947/5877122‑5877270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.