| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 741601 | 4 (0.030) | 4 (0.040) | 4/238 | NT | 50.6% | intergenic (+198/‑302) | PP_t12/PP_0635 | tRNA‑Thr/group II intron‑encoding maturase |
| ? | NC_002947 | = 741676 | NA (NA) | intergenic (+273/‑227) | PP_t12/PP_0635 | tRNA‑Thr/group II intron‑encoding maturase | |||||
CCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAAGCGGATAGAGGCGGCACAGCGGGGTGAGGTGGCACAAATCGCCAAAGCCCAATACTTGCACGGAACGCTGTGACGTAGATCCGACAGG > NC_002947/741452‑741750 | cccGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTG > 1:707991‑M1/1‑150 (MQ=255) ccGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGgtgt > 2:1598256/1‑150 (MQ=38) ccTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTcgc < 2:2306626/150‑1 (MQ=35) ttGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCgg < 2:453756/150‑1 (MQ=33) gCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGGGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACAGACACGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGa < 2:1170869/150‑1 (MQ=12) gCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGa < 2:1171478/150‑1 (MQ=32) gggCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGAcc > 2:2172414/1‑150 (MQ=32) aTGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGccgcctctatccgcttcctgttcgtcaggccagca > 2:1137715‑M1/1‑115 (MQ=255) cAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacac < 1:1137715‑M1/150‑79 (MQ=255) ggCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccg > 1:2300907‑M1/1‑33 (MQ=255) ggCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccg < 2:2300907‑M1/122‑90 (MQ=255) gggTGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacaccc > 2:1859873‑M1/1‑5 (MQ=255) gggTGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacaccc < 1:1859873‑M1/85‑81 (MQ=255) gTGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagaggactttcacctccaagtcacccacttg < 1:2000066‑M1/150‑148 (MQ=255) gTGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagaggactttcacctccaagtcacccacttg < 2:2555748‑M1/150‑148 (MQ=255) gTGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagaggactttcacctccaagtcacccacttg < 1:1392133‑M1/150‑148 (MQ=255) gTGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggcgaacactcccccttgccgggtgtgtagaggactttcacctccaagtcacccactgg < 2:927788‑M1/150‑148 (MQ=255) gTGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagatgcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagaggactttcacctccaagtcacccacttg < 2:539616‑M1/150‑148 (MQ=255) tGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagaggactttcacctccaagtcacccacttgg < 1:270393‑M1/150‑149 (MQ=255) tGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcaaactgcgaacatttccccttgccgggtgtgtagaggactttcacctccaagtcacccacttgg < 2:1189210‑M1/150‑149 (MQ=255) gccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagaggactttcacctccaagtcacccacttggc > 2:2783428‑M1/1‑1 (MQ=255) gccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagaggactttcacctccaagtcacccacttggc < 2:447872‑M1/150‑150 (MQ=255) gccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagaggactttcacctccaagtcacccacttggc < 1:1940282‑M1/150‑150 (MQ=255) | CCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAAGCGGATAGAGGCGGCACAGCGGGGTGAGGTGGCACAAATCGCCAAAGCCCAATACTTGCACGGAACGCTGTGACGTAGATCCGACAGG > NC_002947/741452‑741750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |