New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 4649318107 (0.930)6 (0.050) 6/234 NT 5.5% coding (1642/1710 nt) PP_4113 hypothetical protein
?NC_002947 = 4649332 103 (0.940)coding (1628/1710 nt) PP_4113 hypothetical protein

Only 100 of 133 total aligned reads displayed.

CCTGTGGTGCAGTCCTGACGGACGTTAGAAAAACGAGAGGCGCGATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGTCAAGGCACTGCGCCGCAACAACATGCGCACCTGTTCCGGG  >  NC_002947/4649173‑4649463
                                                                                                                                                 |                                                                                                                                                  
ccTGTGGTGCAGTCCTGACGGACGTTAGAAAAACGAGAGCCTCGATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGccc                                                                                                                                                <  1:504434/150‑1 (MQ=255)
  tgtgGTGCAGTCCTGACGGACGTTAGAAAAACGAGAGGCGCGATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAg                                                                                                                                              <  2:857541/150‑1 (MQ=255)
   gtggtaCAGTCCTGACGGACGTTAGAAAAACGAGAGGCGCGATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAgg                                                                                                                                             >  2:377220/1‑150 (MQ=255)
      gtgCAGTCCTGACGGACGTTAGAAAAACGAGAGGCGCGAGGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTcc                                                                                                                                          >  1:517746/1‑150 (MQ=255)
       tacAGTCCTGACGGACGTTAGAAAAACGAGAGGCGCGATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑g                                                                                                                                        <  1:377220/148‑1 (MQ=255)
        gCAGTCCTGACGGACGTTAGAAAAACGAGAGGCGCGATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑gg                                                                                                                                       <  2:802496/150‑1 (MQ=255)
              cTGACGGACGTTAGAAAAACGAGAGGCGCGATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTACATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTcgtt                                                                                                                                 <  1:2941291‑M2/150‑5 (MQ=255)
                  cggacgTTAGAAAAACGGCGAATTCGATGTTACGGAATTTGTCTGACAGCGGCCCCCGCTCAACGCCCCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAgg                                                                                                                             <  1:937423/150‑1 (MQ=255)
                     acgTTAGAAAAACGAGAGGCGCGATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAggcgg                                                                                                                          <  2:1832284/150‑1 (MQ=255)
                       gTTAGAAAAACGAGAGGCGCGATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCa                                                                                                                               <  1:2753480/143‑1 (MQ=255)
                       gTTAGAAAAACGAGAGGCGCGATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCa                                                                                                                               >  2:2753480/1‑143 (MQ=255)
                          aGAAAAACGAGAGGCGCGATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTTGTTCAGGCGGccacc                                                                                                                     >  1:1838129/1‑150 (MQ=255)
                            aaaaaCGAGAGGCGCGATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCcaccac                                                                                                                   >  2:898930/1‑150 (MQ=255)
                                    gagGTGCGATGTTACGGAATTTGTCAGACCGCGGCCCCCCCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAg                                                                                                           <  1:1531132/150‑1 (MQ=255)
                                       gcgcGATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTcgttcagcgcgcctg                                                                                                                      >  2:874395‑M2/1‑121 (MQ=255)
                                       gcgcGATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGGCGTTCAGGCGGCCACCACGCTCTGAGGGc                                                                                                        >  2:1864202/1‑150 (MQ=255)
                                         gcgATGTTACGTTATTTGTCTGACAGCGCCCACTGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGTTCGTTCAGGCGGCCACCACGCTCTGAGGGCAg                                                                                                      <  1:286016/150‑1 (MQ=255)
                                         gcgATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCa                                                                                                       <  2:2960721/149‑1 (MQ=255)
                                         gcgATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCa                                                                                                       >  1:2960721/1‑149 (MQ=255)
                                         gcgATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAg                                                                                                      >  2:1369601/1‑150 (MQ=255)
                                         gcgATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAg                                                                                                      >  2:2767633/1‑150 (MQ=255)
                                            aTGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGAt                                                                                                   >  2:2987416/1‑150 (MQ=255)
                                                tACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGCCGCCGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGgc                                                                                               <  2:1204572/150‑1 (MQ=255)
                                                 aCGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGgcg                                                                                              >  2:788089/1‑150 (MQ=255)
                                                  cGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGgcgc                                                                                             >  2:1128256/1‑150 (MQ=255)
                                                   ggAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACgg                                                                                                                                                   >  2:1159182/1‑96 (MQ=255)
                                                   ggAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACgg                                                                                                                                                   <  1:1159182/96‑1 (MQ=255)
                                                     aaTTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGt                                                                                          >  2:21494/1‑150 (MQ=255)
                                                        ttGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAg                                                                                       <  1:1128256/150‑1 (MQ=255)
                                                        ttGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGCCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAg                                                                                       <  1:898930/150‑1 (MQ=255)
                                                           tCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCa                                                                                        >  2:1941360/1‑146 (MQ=255)
                                                           tCTGACAGCGGCCACCGCCCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCa                                                                                        <  1:1941360/146‑1 (MQ=255)
                                                              gACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGGCAGGGCTTc                                                                                 >  2:206226/1‑150 (MQ=255)
                                                               aCAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGccc                                                                                                                                                >  2:2670873/1‑87 (MQ=255)
                                                                 aGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTcgttc                                                                                                                                >  2:2012917‑M2/1‑95 (MQ=255)
                                                                 aGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTcgttc                                                                                                                                <  1:2012917‑M2/100‑6 (MQ=255)
                                                                     gCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGcatcc                                                                          <  1:786694/150‑1 (MQ=255)
                                                                       cACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCgg                                                                               >  2:2950807/1‑143 (MQ=255)
                                                                        aCCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGcatccatc                                                                       >  1:2476057/1‑150 (MQ=255)
                                                                        aCCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGcatccatc                                                                       >  1:2392083/1‑150 (MQ=255)
                                                                        aCCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGcatccatc                                                                       >  1:1915381/1‑150 (MQ=255)
                                                                             tCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTc                                                                  <  1:788089/150‑1 (MQ=255)
                                                                               aaCGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑ggg                                                                                                                                      >  1:278297/1‑80 (MQ=255)
                                                                               aaCGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑ggg                                                                                                                                      <  2:278297/80‑1 (MQ=255)
                                                                               aaCGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATGGCTTCGa                                                                >  2:1088426/1‑150 (MQ=255)
                                                                               aaCGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGa                                                                >  1:1516961/1‑150 (MQ=255)
                                                                                aCGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGaa                                                               <  2:3068756/150‑1 (MQ=255)
                                                                                   cACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATAGCTTCGAAATc                                                            <  2:517746/150‑1 (MQ=255)
                                                                                      ccGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTg                                                         >  2:1929231/1‑150 (MQ=255)
                                                                                        gTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTc                                                                  >  2:2239588/1‑139 (MQ=255)
                                                                                         ttCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGACCC‑GGACCTGGGCcgttcggcgcgcctggacatgcagc                                                                                                            <  1:420452‑M2/96‑26 (MQ=255)
                                                                                         ttCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGACCC‑GGACCTGGGCcgttcggcgcgcctggacatgcagc                                                                                                            >  2:420452‑M2/1‑71 (MQ=255)
                                                                                          tCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCg                                                     <  1:2767633/150‑1 (MQ=255)
                                                                                            cAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAg                                                                                                           >  1:167384/1‑94 (MQ=255)
                                                                                            cAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGgc                                                   >  1:1270228/1‑150 (MQ=255)
                                                                                               gCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGccc                                                                                                                                                >  2:1598337/1‑55 (MQ=255)
                                                                                                  ctGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGacccggacctgggccgttcgg                                                                                                                               >  1:1852117‑M1/1‑48 (MQ=255)
                                                                                                    gCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAggg                                           <  2:154558/150‑1 (MQ=255)
                                                                                                    gCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAggg                                           >  2:1692467/1‑150 (MQ=255)
                                                                                                     cACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGcatcc                                                                          >  2:2986464/1‑118 (MQ=255)
                                                                                                     cACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGcatcc                                                                          <  1:2986464/118‑1 (MQ=255)
                                                                                                      aCGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGTc                                         >  2:2161044/1‑150 (MQ=255)
                                                                                                         gCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGgcgc                                                                                             <  2:1201040/95‑1 (MQ=255)
                                                                                                         gCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGTCAAg                                      <  2:1516961/150‑1 (MQ=255)
                                                                                                            aGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGgcg                                                                                              >  2:2306952/1‑91 (MQ=255)
                                                                                                            aGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGgcg                                                                                              <  1:2306952/91‑1 (MQ=255)
                                                                                                            aGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGTCAAGGCa                                   >  2:1290210/1‑150 (MQ=255)
                                                                                                             ggTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGTCAAGGCAc                                  >  2:2043494/1‑150 (MQ=255)
                                                                                                              gTCCAGCGCACTCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCg                                                                                >  2:1888947/1‑103 (MQ=255)
                                                                                                              gTCCAGCGCACTCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCg                                                                                <  1:1888947/103‑1 (MQ=255)
                                                                                                              gTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGtt                                                       <  1:1076829/128‑1 (MQ=255)
                                                                                                              gTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGtt                                                       >  2:1076829/1‑128 (MQ=255)
                                                                                                               tCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGTCAAGGCACTg                                >  1:1224130/1‑150 (MQ=255)
                                                                                                               tCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGCTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGTCAAGGCACTg                                >  1:1160385/1‑150 (MQ=255)
                                                                                                                 cAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGTCAAGGCACTgcg                              >  2:1918843/1‑150 (MQ=255)
                                                                                                                   gcgcACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGca                                                                             >  2:1758500/1‑101 (MQ=255)
                                                                                                                   gcgcACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGca                                                                             <  1:1758500/101‑1 (MQ=255)
                                                                                                                   gcgcACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGt                                          >  1:49976/1‑136 (MQ=255)
                                                                                                                      cACTCTGCAGGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGTCAAGGCACTGCGCCGca                         <  1:1286656/150‑1 (MQ=255)
                                                                                                                       aCGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCgg                                                                                                >  1:2158106/1‑78 (MQ=255)
                                                                                                                       aCGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCgg                                                                                                <  2:2158106/78‑1 (MQ=255)
                                                                                                                       aCGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGTCAAGGCACTGcgccgcga                        <  1:2161044/150‑3 (MQ=255)
                                                                                                                         gCTGCATGTCCAGGCGCGCCGAACGgcccaggtccgggtcgttcggcgcgcctggacatgcagcgtgcgctggacctggccgtgcagagcctggaa                                                                             <  1:420452‑M1/96‑72 (MQ=255)
                                                                                                                         gCTGCATGTCCAGGCGCGCCGAACGgcccaggtccgggtcgttcggcgcgcctggacatgcagcgtgcgctggacctggccgtgcagagcctggaa                                                                             >  2:420452‑M1/1‑25 (MQ=255)
                                                                                                                         gCTGCATGTCCAGGCGCGCCGAACGGCGCAGGTAC‑GGGGCGTTCAGGCGGCCACGACGCTCTGAGGGCAGGATAGGCGCCGTCAGGTCTTCGGCATCCATCGCTTGGAAATCCTGTTCGGCGCCCAGGGTCAAGGCACTGCGCCGcaaca                      >  1:1492782/1‑150 (MQ=255)
                                                                                                                         gCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAACCACGATTCGGCGCCCAGGGTCAAGGCACTGCGCCGcaaca                      >  1:1696449/1‑150 (MQ=255)
                                                                                                                         gCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGTCAAGGCACTGCGCCGcaaca                      >  2:665302/1‑150 (MQ=255)
                                                                                                                           tGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGTCAAGGCACTGCGCCGCaacaac                    <  1:2043494/150‑1 (MQ=255)
                                                                                                                             cATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGTCAAGGCACTGCGCCGCAACAACAt                  >  1:3027692/1‑150 (MQ=255)
                                                                                                                                gTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGt                                          <  1:2229823/123‑1 (MQ=255)
                                                                                                                                   cAGGCGCGCTGAACGacccggacctgggccgttcggcgcgcctggacatgcagcgtgcgctggacctggccgtgcagagcctggaacgggtgcgttgagcggtggccgctgtcagacaaattccgtaacatcgcgc                           <  1:874395‑M1/136‑122 (MQ=255)
                                                                                                                                        cgcccGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGGCAAGGCACTGCGCCGCAACAACATGCGCACCTGtt       >  1:1683916/4‑150 (MQ=255)
                                                                                                                                          gcCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGTCAAGGCACTGCGCCGCAACAACAt                  <  2:1359881/137‑1 (MQ=255)
                                                                                                                                           ccGAACGGCCCAGGTCC‑GGGTcgttcggcgcgcctggacatgcagcgtgcgctggacctggccgtgcag                                                                                     <  2:1852117‑M2/69‑49 (MQ=255)
                                                                                                                                            cGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAgg                                                                                                     <  1:926348/52‑1 (MQ=255)
                                                                                                                                            cGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAgg                                                                                                     >  2:926348/1‑52 (MQ=255)
                                                                                                                                            cGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGTCAAGGCACTGCGCCGCAACAACATGCGCACCTGTTCCgg   >  2:545168/1‑150 (MQ=255)
                                                                                                                                             gAACGacccggacctgggccgttcggcgcgcctggacatgcagcgtgcgctggacctggccgtgcagagcctggaacgggtgcgttgagcggtggccgct                                                     <  1:2012917‑M1/100‑96 (MQ=255)
                                                                                                                                             aaaCGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGAGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGTCAAGGCACTGCGCCGCAACAACATGCGCACCTGTTCCggg  <  2:2941291/149‑1 (MQ=255)
                                                                                                                                              aaCGacccggacctgggccgttcggcgcgcctggacatgtagcgtgcgctggacctggccgtgcagagcctggaacgggtgcgttgagcggtggccgctgtcagacaaattccgtaacatcgcgcctctcgtttttctaacgtccgtcag  <  1:2941291‑M1/150‑147 (MQ=255)
                                                                                                                                                 |                                                                                                                                                  
CCTGTGGTGCAGTCCTGACGGACGTTAGAAAAACGAGAGGCGCGATGTTACGGAATTTGTCTGACAGCGGCCACCGCTCAACGCACCCGTTCCAGGCTCTGCACGGCCAGGTCCAGCGCACGCTGCATGTCCAGGCGCGCCGAACGGCCCAGGTCC‑GGGTCGTTCAGGCGGCCACCACGCTCTGAGGGCAGGATCGGCGCCGTCAGGTCTTCGGCATCCATCGCTTCGAAATCCTGTTCGGCGCCCAGGGTCAAGGCACTGCGCCGCAACAACATGCGCACCTGTTCCGGG  >  NC_002947/4649173‑4649463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.