BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5681419	72 (0.630)	6 (0.060)	6/198	NT	9.0%	intergenic (‑85/+123)	PP_4986/PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
*	?	NC_002947	= 5681488	63 (0.680)	6 (0.060)	6/198	NT	9.0%	intergenic (‑154/+54)	PP_4986/PP_4987	hemolysin III family channel protein/putative Chemotaxis protein

Only 100 of 126 total aligned reads displayed.

AGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGC  >  NC_002947/5681275‑5681568

agcagcGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAggg                                                                                                                                                  <  1:1237944/150‑1 (MQ=255)

           cGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGgc                                                                                                                                                <  1:2078798/141‑1 (MQ=255)

           cGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGgc                                                                                                                                                >  2:2078798/1‑141 (MQ=255)

            ggCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGc                                                                                                                                      >  2:1505819/1‑150 (MQ=255)

            ggCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGc                                                                                                                                      <  2:2751769/150‑1 (MQ=255)

             gCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAg                                                                                                                                          >  1:1246383/1‑145 (MQ=255)

             gCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAg                                                                                                                                          <  2:1246383/145‑1 (MQ=255)

                 cGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAtagggctgcgcagcagccccgg                                                                                                                                 >  1:1623231‑M1/1‑128 (MQ=255)

                 cGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAg                                                                                                                                 <  1:15603/150‑1 (MQ=255)

                  gACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAgg                                                                                                                                >  2:1986704/1‑150 (MQ=255)

                       ggTGTGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTc                                                                                                                           <  1:332036/150‑1 (MQ=255)

                        gTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAtagggctgcgcagcagccccggcggttca                                                                                                                          >  1:397766‑M1/1‑121 (MQ=255)

                          gggTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCAtt                                                                                                                        <  2:1908406/150‑1 (MQ=255)

                            gTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGc                                                                                                                      <  2:2480651/150‑1 (MQ=255)

                             tCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAtagggctgcgcagcagccccggcggttcatgcag                                                                                                                     <  2:1623231‑M1/150‑35 (MQ=255)

                             tCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGCGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGcc                                                                                                                     >  2:1048439/1‑150 (MQ=255)

                                        aaGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCttt                                                                                                                            >  1:311349/1‑132 (MQ=255)

                                         aGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAAcc                                                                                                         <  2:829415/150‑1 (MQ=255)

                                          gCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAAccg                                                                                                        >  2:1971188/1‑150 (MQ=255)

                                              tCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCgg                                                                                                    <  1:2470469/150‑1 (MQ=255)

                                                aCCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCa                                                                                                                                  >  1:784270/1‑118 (MQ=255)

                                                aCCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGCGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCgggg                                                                                                  <  1:1048439/150‑1 (MQ=255)

                                                  cGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCtt                                                                                                                             >  1:3538/1‑121 (MQ=255)

                                                  cGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCtt                                                                                                                             <  2:3538/121‑1 (MQ=255)

                                                  cGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGgct                                                                                                >  1:263661/1‑150 (MQ=255)

                                                     aaTACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTg                                                                                                                 >  2:2048992/1‑130 (MQ=255)

                                                     aaTACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTg                                                                                                                 <  1:2048992/130‑1 (MQ=255)

                                                     aaTACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGgctgct                                                                                             <  1:1042396/150‑1 (MQ=255)

                                                     aaTACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGgctgct                                                                                             <  2:339785/150‑1 (MQ=255)

                                                          aTGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCa                                                                                                                    >  1:1369701/1‑122 (MQ=255)

                                                          aTGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCa                                                                                                                    <  2:1369701/122‑1 (MQ=255)

                                                          aTGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCa                                                                                        >  2:1468870/1‑150 (MQ=255)

                                                            gCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTGTTTGTGGGAGCGGACTCGTGACACGAAATGGCCTCTAAGCGGCCCCAGGTTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGc                                                                                      <  1:2677525/150‑1 (MQ=255)

                                                             cAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGTGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGcc                                                                                     <  1:824347/150‑1 (MQ=255)

                                                              aaaGACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGccc                                                                                    >  2:2295723/1‑150 (MQ=255)

                                                                acacAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTa                                                                                  <  1:1505819/150‑1 (MQ=255)

                                                                 cacaGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTAt                                                                                 <  1:1424115‑M2/150‑2 (MQ=255)

                                                                  ccagACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTAtc                                                                                >  1:2295723‑M2/2‑148 (MQ=255)

                                                                   caGACTTCCGGAGGTGGCCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTAtcg                                                                               >  2:1424115‑M2/1‑147 (MQ=255)

                                                                        ctcctGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGTCCCCAgg                                                                                                                                >  2:2786331/1‑96 (MQ=255)

                                                                        ctcctGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGTCCCCAgg                                                                                                                                <  1:2786331/96‑1 (MQ=255)

                                                                         tcctGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGgc                                                                                                                                                <  1:200335/79‑1 (MQ=255)

                                                                            tGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATGGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTAtcgcgacacaag                                                                      >  1:1328257‑M2/1‑138 (MQ=255)

                                                                             gAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTAtcgcgacacaagg                                                                     >  1:1468870‑M2/1‑137 (MQ=255)

                                                                             gAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTAtcgcgacacaagg                                                                     >  1:784458‑M2/1‑137 (MQ=255)

                                                                             gAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTAtcgcgacacaagg                                                                     >  1:1971188‑M2/1‑137 (MQ=255)

                                                                              aGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGAGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTAtcgcgacacaaggc                                                                    >  1:1898662‑M2/1‑136 (MQ=255)

                                                                                    gCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAgggg                                                                                                                                                 <  2:551589/67‑1 (MQ=255)

                                                                                    gCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAgggg                                                                                                                                                 >  1:551589/1‑67 (MQ=255)

                                                                                     cTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTAtcgcgacacaaggccgctccc                                                             <  2:344844‑M2/150‑22 (MQ=255)

                                                                                         gTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAAc                                                                                                          <  2:794421/101‑1 (MQ=255)

                                                                                              tgttgtGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAtagggctgcgcagcagccccggcggttcatgcagtggcaatgaaagcctg                                                                                                     <  1:280314‑M1/101‑51 (MQ=255)

                                                                                              tgttgtGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAtagggctgcgcagcagccccggcggttcatgcagtggcaatgaaagcctg                                                                                                     >  2:280314‑M1/1‑51 (MQ=255)

                                                                                              tgttgtGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTAtcgcgaca                                                                          >  1:1056909‑M2/1‑120 (MQ=255)

                                                                                                ttgtGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGacca                                                  >  1:3020454/1‑150 (MQ=255)

                                                                                                ttgtGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTACGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGacca                                                  >  1:411278/1‑150 (MQ=255)

                                                                                                   tgATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTAtcgc                                                                              <  2:2573868‑M2/119‑5 (MQ=255)

                                                                                                     aTGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTAtcgctacacaagg                                                                     <  2:1272891‑M2/126‑14 (MQ=255)

                                                                                                     aTGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTAtcgcgacacaagg                                                                     >  1:1272891‑M2/1‑113 (MQ=255)

                                                                                                      tGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCt                                                                                   <  2:2411518/111‑1 (MQ=255)

                                                                                                           aTGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTgc                                       <  2:3020454/150‑1 (MQ=255)

                                                                                                                ttCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTc                                  >  2:2136285/1‑150 (MQ=255)

                                                                                                                  cGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAAccgc                                                                                                       >  1:2280155/1‑79 (MQ=255)

                                                                                                                  cGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAAccgc                                                                                                       <  2:2280155/79‑1 (MQ=255)

                                                                                                                    ttCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACCAGGCCGCTCCCACTCCAACCCACCAGTCCCTGCGCCTCCCAt                              >  1:339042/1‑150 (MQ=25)

                                                                                                                            gggAGCGGCCTTGTGTCGCGAtagggctgcgcagcagccccggcggttcatgcagtggcaatgaaagcctggggccgcttcgcgcccctttcgcgacacaaggccgctcccacaaagaacgaagccatcagcatcacaacaggaacccag                      <  2:344844‑M1/150‑130 (MQ=255)

                                                                                                                             ggAGCGGCCTTGTGTCGCGAtagggctgcgcagcagccccggcggttcatgcagtggcaatgaaagcctggggccgcttcgcgcccctttcgcgacacaaggccg                                                                  >  2:1071873‑M1/1‑20 (MQ=255)

                                                                                                                              gAGCGGCCTTGTGTCGCGAtagggctgcgcagcagccccggcggttcatgcagtggcaatgaaagcctggggccgcttcgcgccccttcc                                                                                <  2:830257‑M1/90‑72 (MQ=255)

                                                                                                                              gAGCGGCCTTGTGTCGCGAtagggctgcgcagcagccccggcggttcatgcagtggcaatgaaagcctggggccgcttcgcgccccttcc                                                                                >  1:830257‑M1/1‑19 (MQ=255)

                                                                                                                              gAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAg                    <  1:2136285/150‑1 (MQ=255)

                                                                                                                              gAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAg                    <  1:1986704/150‑1 (MQ=255)

                                                                                                                               aGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAgg                   >  1:2312815/1‑150 (MQ=255)

                                                                                                                                 cGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTAtcgcgacacaaggccgctcc                                                              <  1:1071873‑M2/105‑21 (MQ=255)

                                                                                                                                 cGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTAtcgcgacacaaggccgctcc                                                              >  2:1071873‑M2/1‑85 (MQ=255)

                                                                                                                                   gCCTTGTGTCGCGAtagggctgcgcagcagccccggcggttcatgcagtggcaatgaaagcctggggccgcttcgcgcctctttcgcgacacaaggccgctcccacaaagaacgaagccatcagcatcacaacaggaacccagcccacct               >  1:1898662‑M1/1‑14 (MQ=255)

                                                                                                                                    ccgttgctCGCGAAAGGCGCGCGAAGCGGGCCCAGTCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg              <  1:1134176/143‑1 (MQ=39)

                                                                                                                                    ccTTGTGTCGCGAtagggctgcgcagcagccccggcggttcatgcagtggcaatgaaagcctggggccgcttcgcgcccctttcgcgacacaaggccgctcccacaaagaacgaagccatcagcatcacaacaggaacccagcccacctc              >  1:784458‑M1/1‑13 (MQ=255)

                                                                                                                                    ccTTGTGTCGCGAtagggctgcgcagcagccccggcggttcatgcagtggcaatgaaagcctggggccgcttcgcgcccctttcgcgacacaaggccgctcccacaaagaacgaagccatcagcatcacaacaggaacccagcccacctc              >  1:2153698‑M1/1‑13 (MQ=255)

                                                                                                                                    ccTTGTGTCGCGAtagggctgcgcagcagccccggcggttcatgcagtggcaatgaaagcctggggccgcttcgcgcccctttcgcgacacaaggccgctcccacaaagaacgaagccatcagcat                                      >  1:1272891‑M1/1‑13 (MQ=255)

                                                                                                                                    ccTTGTGTCGCGAtagggctgcgcagcagccccggcggttcatgcagtggcaatgaaagcctggggccgcttcgcgc                                                                                       >  2:449168‑M1/1‑13 (MQ=255)

                                                                                                                                    ccTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGGACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg              >  2:1182078/1‑150 (MQ=255)

                                                                                                                                    ccTTGTGTAGCGAtagggctgcgcagcagccccggcggttcatgcagtggcaatgaaagcctggggccgcttcgcgcccctttcgcgacacaaggccgctcccacaaagaacgaagccatcagcat                                      <  2:1272891‑M1/126‑114 (MQ=255)

                                                                                                                                     tttGGGTCGCGAAAGGGGTGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGt             <  2:411278/149‑1 (MQ=255)

                                                                                                                                     cTTGTGTCGCGAtagggctgcgcagcagccccggcggttcatgcagtggccatgaaagcctggggccgcttcgcgcccctttcgcgacacaaggccgctcccacaaagaacgaagccatcagcatcacaacaggaacccagcccacctca             >  1:1328257‑M1/1‑12 (MQ=255)

                                                                                                                                      ttGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGtt            <  2:2312815/150‑1 (MQ=255)

                                                                                                                                      ttGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGtt            >  1:2537929/1‑150 (MQ=255)

                                                                                                                                         tgtCGCGAtagggctgcgcagcagccccggcggttcatgcagtggcaatgaaagcctggggccgcttcgcgcccctttcgcgacacaaggccgctcccacaaagaacgaagccatcagcatcacaaca                               >  1:1056909‑M1/1‑8 (MQ=255)

                                                                                                                                         tgtCGCGAtagggctgcgcagcagccccggcggttcatgcagtggcaatgaaagcctggggccgcttcgcgcccctttcgcgacacaaggccgctcccacaaagaacgaagccatcagcatcacaaca                               <  2:1056909‑M1/128‑121 (MQ=255)

                                                                                                                                         tgtCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCTTAtcgcgacacaaggccgctcc                                                              >  2:1716919‑M2/1‑77 (MQ=255)

                                                                                                                                         tgtCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTAtcgcgacacaaggccgctcc                                                              <  1:1716919‑M2/97‑21 (MQ=255)

                                                                                                                                          gtCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTAtcgcgacacaaggccgctcccacaaagaacgaagccatcagcatcacaacaggaacccagcccacctcaggagg        <  2:397766‑M2/150‑75 (MQ=255)

                                                                                                                                           tCGCGAAAGGGGCGCGAAGCTGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCACAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGa       >  2:1354459/1‑150 (MQ=255)

                                                                                                                                           tCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCATACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGa       >  1:187159/1‑150 (MQ=255)

                                                                                                                                           tCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGc          <  1:2546003/147‑1 (MQ=255)

                                                                                                                                           tCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGc          >  2:2546003/1‑147 (MQ=255)

                                                                                                                                             gcgAtagggctgcgcagcagccccggcggttcatgcagtggcaatgaaagcctggggccgcttcgcgcccctttcgcgacacaaggccgctcccacaaagaacgaagccatcagcatca                                    <  2:2573868‑M1/119‑116 (MQ=255)

                                                                                                                                             gcgAtagggctgcgcagcagccccggcggttcatgcagtggcaatgaaagcctggggccgcttcgcgcccctttcgcgacacaaggccgctcccacaaagaacgaagccatcagcatca                                    >  1:2573868‑M1/1‑4 (MQ=255)

                                                                                                                                               gAtagggctgcgcagcagccccggcggttcatgcagtggcaatgaaagcctggggccgcttcgcgcccctttcgcgacacaaggccgctcccacaaagaacgaagccatcagcatcacaacaggaacccagcccacctcaggaggtctgg   >  1:2295723‑M1/1‑2 (MQ=255)

                                                                                                                                               gAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGGCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCcg   >  1:1422879/1‑150 (MQ=255)

                                                                                                                                                atagggctgcgcagcagccccggcggttcatgcagtggcaatgaaagcctggggccgcttcgcgcccctttcgcgacacaaggccgctcccacaaagaacgaagccatcagcatcacaacaggaacccagcccacctcaggaggtctgtg  <  1:1424115‑M1/150‑150 (MQ=255)

AGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGC  >  NC_002947/5681275‑5681568

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.