New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 741972	NA (NA)	4 (0.040)	4/236	NT	NA	coding (70/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	= 741999	NA (NA)					coding (97/1422 nt)	PP_0635	group II intron‑encoding maturase

TCATCCCGAGCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAAAGGTATCGACGGCGTCCGTGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTA  >  NC_002947/741970‑742122                              |                                                                                                                            tcctCCCGAGCTCCGGCCAGAAGCCGAAAGTGACGCCTGACAATGCAAAGGTATCGACGGCGTCCGTGACGTGGACGAACGAGGAGCCGGACACGCTGATGGAGAGGGTGCTTGCACCGGACAACCTAAGGCGTCCGTATCAACGCGTgg     >  2:1402397/4‑150 (MQ=1)    tctcGAGCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAAAGGTATCGACGGCGTCCGTGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTa  <  1:501623/147‑1 (MQ=1)                              |                                                                                                                            TCATCCCGAGCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAAAGGTATCGACGGCGTCCGTGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTA  >  NC_002947/741970‑742122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.