Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 941,942 C→T 5.8% G1228D (GGC→GAC)  PP_0806 ← surface adhesion protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947941,9420CT 5.8% 407.4 / 9.8 137G1228D (GGC→GAC) PP_0806surface adhesion protein
Reads supporting (aligned to +/- strand):  ref base C (66/63);  new base T (4/4);  total (70/67)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.58e-01

Only 100 of 139 total aligned reads displayed.

CCGCCTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTGG  >  NC_002947/941793‑942091
                                                                                                                                                     |                                                                                                                                                     
     tCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTg                                                                                                                                                  <  2:1100684/150‑1 (MQ=255)
      cGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGc                                                                                                                                                 <  1:1307541/150‑1 (MQ=255)
         gCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGGCGTCGTCGGTGccga                                                                                                                                              <  2:3030852/150‑3 (MQ=255)
            gtgtGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTa                                                                                                                                           <  1:1880272/150‑1 (MQ=255)
             tgtgATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACAATAGGCACGGCGGGTGCTTCACGCTTGGCGTGGGCAGGCGACAGGGGGAGGCTGAACAAGCCGTCGGCACCGACGACGCTGGTGAAAATTAg                                                                                                                                          >  2:1606058/1‑150 (MQ=14)
                gagatCCGGGGCTTTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGtt                                                                                                                                       >  2:822723/4‑150 (MQ=255)
                gATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGCCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGtt                                                                                                                                       <  1:1094337/150‑1 (MQ=255)
                   atCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGcc                                                                                                                                    >  1:706136/1‑150 (MQ=255)
                    tCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTTGGCACCGGCGTCGTCGGTGccgac                                                                                                                                             >  1:572816/1‑137 (MQ=14)
                    tCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTTGGCACCGGCGTCGTCGGTGccgac                                                                                                                                             <  2:572816/140‑4 (MQ=11)
                    tCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCTGGTGCCAATTAGGTTGCCg                                                                                                                                   >  2:2018632/1‑150 (MQ=255)
                    tCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCg                                                                                                                                   >  2:1758753/1‑150 (MQ=255)
                      cGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGgc                                                                                                                                 >  2:937420/1‑150 (MQ=255)
                            tgtgAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATc                                                                                                                           <  1:298683/150‑1 (MQ=255)
                            tgtgAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCAACGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATc                                                                                                                           <  1:465530/150‑1 (MQ=255)
                              tgAACTCCACCAGTATCGCAACGTTGCCGGCGGCATCCATCTGACGGACGTCGAGTACTTCACCATTGGCCTGGGCCGGCGCAAGGGCGAGGCAGAACAGGCCGTCCGCACCGACGACGCCGAGGCCAATTAGGTTGCCGGCAGCATcgc                                                                                                                         >  2:812416/1‑150 (MQ=255)
                                 aCTCCAGCGGTATCGAACTGTGGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCa                                                                                                                      <  2:184456/150‑1 (MQ=255)
                                  ctgcAGCGGTAGCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGCGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCAc                                                                                                                     <  2:1120312/147‑1 (MQ=255)
                                      aGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGc                                                                                                                 >  2:2468929/1‑150 (MQ=255)
                                         ggTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAAAAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACg                                                                                                              >  1:2705915/1‑150 (MQ=255)
                                          gTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACgg                                                                                                             <  1:784333/150‑1 (MQ=255)
                                            aTCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTa                                                                                                           <  1:2468929/150‑1 (MQ=255)
                                                aaCTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAgcgc                                                                                                       >  1:1534576/1‑150 (MQ=255)
                                                 aCTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAAt                                                                                                                                             >  1:2949409/1‑111 (MQ=255)
                                                    gTTGCCGGCGGCATCCACCAGACGAACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCggg                                                                                                   <  2:338269/150‑1 (MQ=255)
                                                        ccGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTcg                                                                                               >  1:2256304/1‑150 (MQ=255)
                                                         cggcggCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTcgc                                                                                              >  2:101177/1‑150 (MQ=255)
                                                           gcggcATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTcgccg                                                                                            >  2:802365/1‑150 (MQ=255)
                                                              gcATCCACCAGACGCACGGCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGa                                                                                         >  2:1579451/1‑150 (MQ=255)
                                                                 tCCCCCAGACGCCCGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCg                                                                                      <  1:2288811/150‑1 (MQ=255)
                                                                   caccaGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGt                                                                                    <  1:1041355/150‑1 (MQ=255)
                                                                     ccaGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCAc                                                                                                               <  2:1370182/121‑1 (MQ=255)
                                                                     ccaGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCAc                                                                                                               >  1:1370182/1‑121 (MQ=255)
                                                                      caGCCGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGaa                                                                                 <  1:1130636/150‑1 (MQ=255)
                                                                        gACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAg                                                                               >  2:1126593/1‑150 (MQ=255)
                                                                           gCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGa                                                                            >  2:629554/1‑150 (MQ=255)
                                                                             aCGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGgca                                                                                                                                <  1:2182789/96‑1 (MQ=255)
                                                                             aCGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGgca                                                                                                                                >  2:2182789/1‑96 (MQ=255)
                                                                              cGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGc                                                                         >  2:2667232/1‑150 (MQ=255)
                                                                                   aGTGCTTCAACATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCg                                                                    >  2:1213841/1‑150 (MQ=255)
                                                                                     tGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGt                                                                              <  1:1305134/138‑1 (MQ=255)
                                                                                     tGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGt                                                                              >  2:1305134/1‑138 (MQ=255)
                                                                                       cTTCACAATTGGCATAGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCa                                                                >  2:2431061/1‑150 (MQ=255)
                                                                                        ttCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAgg                                                                                                                                         <  2:730662/76‑1 (MQ=255)
                                                                                        ttCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAgg                                                                                                                                         >  1:730662/1‑76 (MQ=255)
                                                                                        ttCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCaa                                                               >  2:3194/1‑150 (MQ=255)
                                                                                        ttCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCaa                                                               >  1:2288381/1‑150 (MQ=255)
                                                                                         tCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGgc                                                                                                                                 <  1:2972925/83‑1 (MQ=255)
                                                                                         tCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGgc                                                                                                                                 >  2:2972925/1‑83 (MQ=255)
                                                                                         tCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAg                                                              <  1:101177/150‑1 (MQ=255)
                                                                                          cACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAgg                                                             >  1:1436133/1‑150 (MQ=255)
                                                                                          cACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGACGGCAGCATCGCGCAATTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGTCAAgg                                                             >  2:2861308/1‑150 (MQ=255)
                                                                                           aCCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGCCGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGACAGTGACGCCATCGGCCAAGGc                                                            >  1:343660/1‑150 (MQ=255)
                                                                                           aCCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGc                                                            <  1:233753/150‑1 (MQ=255)
                                                                                           aCCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGc                                                            >  2:1953676/1‑150 (MQ=255)
                                                                                             cATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCaa                                                               >  2:446445/1‑145 (MQ=255)
                                                                                             cATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCa                                                          <  1:1171807/150‑1 (MQ=255)
                                                                                              aTTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAg                                                         >  2:1484600/1‑150 (MQ=255)
                                                                                                    cTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGt                                                   >  2:412640/1‑150 (MQ=255)
                                                                                                    cTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGt                                                   <  2:2962951/150‑1 (MQ=255)
                                                                                                     tGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGAACGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTc                                                  >  1:1412548/1‑150 (MQ=255)
                                                                                                         ccGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGtt                                              <  1:629554/150‑1 (MQ=255)
                                                                                                         ccGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGtt                                              <  1:1126593/150‑1 (MQ=255)
                                                                                                              gACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAg                                                                                                                                          >  2:1646365/1‑53 (MQ=255)
                                                                                                              gACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAg                                                                                                                                          <  1:1646365/53‑1 (MQ=255)
                                                                                                                cAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCgg                                                                                     <  1:1981031/104‑1 (MQ=255)
                                                                                                                 aGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCCCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAggc                                      <  1:843972/150‑1 (MQ=255)
                                                                                                                   ggTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAggcgg                                    >  1:20997/1‑150 (MQ=255)
                                                                                                                   ggTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAggcgg                                    <  2:227627/150‑1 (MQ=255)
                                                                                                                     tGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTtgtg                                           >  2:2078693/1‑141 (MQ=255)
                                                                                                                         gCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCGGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCaa                              >  2:150567/1‑150 (MQ=255)
                                                                                                                         gCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGAc                                                                           >  2:1903481/1‑105 (MQ=255)
                                                                                                                         gCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGAc                                                                           <  1:1903481/105‑1 (MQ=255)
                                                                                                                         gCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTc                                                  <  1:2180256/130‑1 (MQ=255)
                                                                                                                         gCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTc                                                  >  2:2180256/1‑130 (MQ=255)
                                                                                                                          cTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAg                             <  1:828246/150‑1 (MQ=255)
                                                                                                                           tGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCaa                              <  1:365725/148‑1 (MQ=255)
                                                                                                                               catgCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACCGTAGCGCCGGGCTCGCCGCGACCGGTCAAAGTGACGCCATCGGCCAAGGCCAGGTTCCTTTGTTGTGCAGGCGGCAGCAAGTCGGc                        <  1:2861308/147‑1 (MQ=21)
                                                                                                                                aGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGcc                       >  2:2161328/1‑150 (MQ=255)
                                                                                                                                 ggCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCa                                         >  2:2292226/1‑131 (MQ=255)
                                                                                                                                  gCCGTCGGCACCGACGACCCCGTGGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGa                     <  1:937420/150‑1 (MQ=255)
                                                                                                                                   taattggCACCGGCGTCGTCGGTGCCGATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGc                                          >  1:2539264/6‑128 (MQ=21)
                                                                                                                                   taattggCACCGGCGTCGTCGGTGCCGATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGc                                          <  2:2539264/123‑1 (MQ=21)
                                                                                                                                   ccGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAg                    <  2:2241028/150‑1 (MQ=255)
                                                                                                                                    cGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCa                                                     >  1:2755333/1‑116 (MQ=255)
                                                                                                                                    cGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCa                                                     <  2:2755333/116‑1 (MQ=255)
                                                                                                                                    cGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAgg                   >  1:764395/1‑150 (MQ=255)
                                                                                                                                     ttCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGt                  >  2:2052364/2‑150 (MQ=255)
                                                                                                                                     gTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACACCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGt                  >  2:59618/1‑150 (MQ=255)
                                                                                                                                       cGGCACCGTAGACGCCGGTGCAAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGa                <  2:716865/150‑1 (MQ=255)
                                                                                                                                       cGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGa                <  2:1777833/150‑1 (MQ=255)
                                                                                                                                        ggCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGAc               <  1:2770388/150‑1 (MQ=255)
                                                                                                                                          cACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCg             >  1:2259881/1‑150 (MQ=255)
                                                                                                                                             cgacgaCGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGaa                                                                                 <  1:1897074/79‑1 (MQ=255)
                                                                                                                                             cgacgaCGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGc          <  1:2260319/150‑1 (MQ=255)
                                                                                                                                               acgacgCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGa                                                                                         <  2:2023083/69‑1 (MQ=255)
                                                                                                                                               acgacgCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGa                                                                                         >  1:2023083/1‑69 (MQ=255)
                                                                                                                                                cgacgCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCg       <  1:3194/150‑1 (MQ=255)
                                                                                                                                                    gCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTg   <  1:775410/150‑1 (MQ=255)
                                                                                                                                                     ccGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTgg  <  2:878698/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
CCGCCTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTGG  >  NC_002947/941793‑942091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑