| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 955,083 | T→A | 5.4% | intergenic (+34/‑279) | cyoE → / → alaC | protoheme IX farnesyltransferase/aminotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 955,083 | 0 | T | A | 5.4% | 274.1 / 5.9 | 93 | intergenic (+34/‑279) | cyoE/alaC | protoheme IX farnesyltransferase/aminotransferase |
| Reads supporting (aligned to +/- strand): ref base T (32/56); new base A (3/2); total (35/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.87e-01 | |||||||||||
GCAAGTGGGCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACC > NC_002947/954934‑955176 | gCAAGTGGGCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACt < 1:1687400/150‑1 (MQ=255)gCAAGTGGGCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACt < 2:1018744/150‑1 (MQ=255) cAAGTGGGCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACtg > 2:2452768/1‑150 (MQ=255) aaGTGGGCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACtgt > 1:2652412/1‑150 (MQ=255) aaGTGGGCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACtgt < 1:2599156/150‑1 (MQ=255) gTGGGCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑Gc < 1:2840563/150‑1 (MQ=255) gCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTGTCACGAAAACCCCGGC‑CACTGT‑GCCggg > 1:2940989/1‑150 (MQ=255) ccGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCggg > 1:1682157/1‑148 (MQ=255) ccGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCggg < 2:1682157/148‑1 (MQ=255) ccGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑t > 1:1974204/1‑150 (MQ=255) cGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑tt > 2:703226/1‑150 (MQ=255) aGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑tttttt > 2:1948932/1‑150 (MQ=255) gtTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTg > 2:578150/1‑150 (MQ=255) gtTCGGCTTCCCAACCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTg < 1:1399249/150‑1 (MQ=255) ttCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑ttttttttggt < 1:2123758/150‑4 (MQ=255) ttCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTgg < 1:1471303/150‑1 (MQ=255) ttCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTgg < 1:2543699/150‑1 (MQ=255) ttCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTgg > 2:2323748/1‑150 (MQ=255) ttCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCCGGA‑TTTTTTTTTgg < 2:118154/150‑1 (MQ=255) tCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTggg < 1:208183/150‑1 (MQ=255) ctgctcCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGGGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTa < 2:1465538/147‑1 (MQ=255) ttCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTAt > 2:1732786/1‑150 (MQ=255) ctcCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCACAGTG‑‑GCCGGGG‑t < 2:123137/132‑1 (MQ=255) ctcCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑‑CACAGTGGCCGGGG‑t > 1:123137/1‑132 (MQ=255) ccATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑‑CACAGTGGCCGGGG‑tt < 1:2495393/131‑1 (MQ=255) ccATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑‑CACAGTGGCCGGGG‑tt > 2:2495393/1‑131 (MQ=255) cATCTTGACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAACCCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTc < 2:2309873/150‑1 (MQ=255) cATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTCCGCTCGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTc < 1:1740031/150‑1 (MQ=255) aTCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTcc < 1:1948932/150‑1 (MQ=255) tCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCt < 1:695410/150‑1 (MQ=255) cTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTTAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCtgt < 1:1130596/150‑1 (MQ=255) cTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCtgt < 1:102770/150‑1 (MQ=255) cTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCtgt < 1:2347498/150‑1 (MQ=255) tCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGAAACAAAGACGGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTCCTTTTGGGGGTATTTTTCCtgtg > 1:968545/1‑150 (MQ=255) aCCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGcc < 2:2940989/150‑1 (MQ=255) ccGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCg < 1:703226/150‑1 (MQ=255) gTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACtgt > 2:2575294/1‑111 (MQ=255) gTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACtgt < 1:2575294/111‑1 (MQ=255) gTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGc > 2:1972556/1‑150 (MQ=255) aCTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑‑CACAGTGGCCGGGG‑ttttc > 1:123631/1‑119 (MQ=255) aCTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑‑CACAGTGGCCGGGG‑ttttc < 2:123631/120‑2 (MQ=255) tGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCtt > 2:2415126/1‑150 (MQ=255) cccTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGACACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTTACGGCCTCTTct > 2:1524224/1‑149 (MQ=255) ccTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCggg < 1:51383/109‑1 (MQ=255) ccTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCggg > 2:51383/1‑109 (MQ=255) tGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCgg < 2:734290/150‑1 (MQ=255) tGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCgg < 1:1994215/150‑1 (MQ=255) gAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCggg < 1:1189949/150‑1 (MQ=255) tgatgaTGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAAc < 1:1972556/150‑1 (MQ=255) tgatgaTGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCAAGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAAc < 1:1343590/150‑1 (MQ=255) gatgatGGGTGTGGACAGCCAGCCAGCTCTCGATCTATCGCTTTCCTACTCACGGTGAAACTGCTGCCTGTTGCGTGAAAACCCAGGC‑CACTGT‑GCCGGGGTTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAAc < 1:2214380/150‑1 (MQ=255) gatgGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGc > 1:50639/1‑150 (MQ=255) gtgGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACa < 2:239066/150‑1 (MQ=255) gtgGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACag < 1:1639174/150‑2 (MQ=255) gaaCAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAg < 2:2995845/148‑1 (MQ=255) gACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACagga > 2:327125/1‑147 (MQ=255) ccAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCgg > 1:44453/1‑125 (MQ=255) ccAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCgg < 2:44453/125‑1 (MQ=255) caaGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGCGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑t < 1:1524224/148‑1 (MQ=255) aGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGt < 2:2652412/150‑1 (MQ=255) aGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGt < 2:50639/150‑1 (MQ=255) gACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTTCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTa < 2:1974204/150‑1 (MQ=255) gACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTa < 1:578150/150‑1 (MQ=255) cGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTGCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGa < 1:2323748/150‑1 (MQ=255) cGCTGCGGATGTACTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCgg > 1:2179208/1‑108 (MQ=255) cGCTGCGGATGTACTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCgg < 2:2179208/108‑1 (MQ=255) gCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAATCCCGCTCCTTCAAGGTTCC‑TGTAGGAGctg < 2:968545/150‑3 (MQ=255) gCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCT‑TGTAGGAGCgg < 1:2452768/150‑1 (MQ=37) gCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCgg < 1:2415126/150‑1 (MQ=255) gCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCgg < 2:3017049/150‑1 (MQ=255) cgatctgtgCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACACGAGCCTAC‑AGGAACCTTGTAGGAGCgg < 1:1950887/145‑1 (MQ=37) tgCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTACCGTTTTGGTCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCT‑TGTAGGAGCgggagatcg > 2:1950887/1‑144 (MQ=25) gCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGGTTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCT‑TGTAGGAGCggg > 1:1715139/1‑144 (MQ=25) gCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGGTTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AGGAACCTTGTAGGAGCggg < 2:1715139/144‑1 (MQ=25) tgatgaCCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGc < 1:1420198/95‑1 (MQ=255) tgatgaCCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGc > 2:1420198/1‑95 (MQ=255) tgatgaCCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTc < 1:2616750/117‑1 (MQ=255) tgatgaCCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTc > 2:2616750/1‑117 (MQ=255) tgatgaCCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTAct > 1:2575051/1‑146 (MQ=255) tgatgaCCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTAcc < 2:2575051/147‑1 (MQ=255) tgaCCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCT‑TGTAGGAGCggg > 2:3061534/1‑138 (MQ=37) tgaCCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AGGAACCTTGTAGGAGCggg < 1:3061534/138‑1 (MQ=37) aCCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAg < 1:1864686/119‑1 (MQ=255) aCCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAg > 2:1864686/1‑119 (MQ=255) tGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACaa > 1:1887353/1‑106 (MQ=255) tGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACaa < 2:1887353/106‑1 (MQ=255) ctgcCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACaa < 1:233527/98‑1 (MQ=255) ctgcCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACaa > 2:233527/1‑98 (MQ=255) ccTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTCGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑Tg < 1:1999592/103‑1 (MQ=255) ccTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTCGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑Tg > 2:1999592/1‑103 (MQ=255) gTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTgggg < 2:474943/45‑1 (MQ=255) gTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTgggg > 1:474943/1‑45 (MQ=255) cccGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCT‑TGTAGGAGCggg > 2:2514244/1‑97 (MQ=18) cccGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AGGAACCTTGTAGGAGCggg < 1:2514244/97‑1 (MQ=18) ccGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCT‑TGTAGGAGCggg > 1:2176070/1‑96 (MQ=18) ccGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTc < 2:304414/83‑1 (MQ=255) ccGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTc > 1:304414/1‑83 (MQ=255) ccGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AGGAACCTTGTAGGAGCggg < 2:2176070/96‑1 (MQ=18) cGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑t < 1:2029408/84‑1 (MQ=255) cGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑t > 2:2029408/1‑84 (MQ=255) | GCAAGTGGGCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGC‑CACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACC > NC_002947/954934‑955176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |