| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,330,500 | C→T | 5.2% | intergenic (+25/‑282) | PP_5SE → / → PP_1157 | 5S ribosomal RNA/acetolactate synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,330,500 | 0 | C | T | 5.2% | 339.6 / 6.4 | 116 | intergenic (+25/‑282) | PP_5SE/PP_1157 | 5S ribosomal RNA/acetolactate synthase |
| Reads supporting (aligned to +/- strand): ref base C (58/51); new base T (4/2); total (62/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.85e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.33e-01 | |||||||||||
Only 100 of 116 total aligned reads displayed.
TGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTCAACGCAG > NC_002947/1330387‑1330642 | tGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAAt > 2:1322122/1‑150 (MQ=11) gATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAAtt > 1:509883/1‑150 (MQ=31) atcccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTg > 1:1191697/1‑150 (MQ=32) atcccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGCTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTg < 1:2977099/150‑1 (MQ=17) tcccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTgg < 2:509883/150‑1 (MQ=32) tcccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTgg < 2:1191697/150‑1 (MQ=32) cccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGa < 2:1041734/150‑1 (MQ=33) ccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTg > 2:1322833/1‑147 (MQ=32) ccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGAc > 1:647357/1‑150 (MQ=34) atcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCGGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCt > 1:1797467/1‑150 (MQ=25) tcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTg > 2:2994396/1‑150 (MQ=35) tcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTg > 2:1858068/1‑150 (MQ=35) cGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGGAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAGAATTGGACCTGCTc > 1:758963/1‑150 (MQ=25) cGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCCCTCGGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTc > 1:809306/1‑150 (MQ=11) gAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCg > 1:2411987/1‑150 (MQ=38) agtagtGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCg < 1:250430/150‑1 (MQ=40) agtagtGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCg < 1:1322122/150‑1 (MQ=255) agtagtGAAACGATGCATCGCCGATGGCGCATGGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCg > 1:1617563/1‑150 (MQ=14) gtagtGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCgg < 2:647357/150‑1 (MQ=255) tGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCGCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGAt > 1:593691/1‑150 (MQ=255) tGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGAt < 2:2411987/150‑1 (MQ=255) aaaCGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATgg > 2:45488/1‑150 (MQ=255) gATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGAcc > 2:393955/1‑127 (MQ=35) gATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGAcc < 1:393955/127‑1 (MQ=35) aTGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCg > 2:2736632/1‑150 (MQ=255) aTCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCGAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCtt > 2:212161/1‑150 (MQ=255) tCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGGACCGGCTTc > 1:1367828/1‑150 (MQ=255) gCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGc < 2:1947184/150‑1 (MQ=255) cGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCg < 2:3027955/150‑1 (MQ=255) aTGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGgt < 1:573890/150‑1 (MQ=255) ggTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATAGAACAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCGAAGCCGgtgc < 1:1569083/150‑2 (MQ=17) gTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCg > 2:239400/1‑145 (MQ=255) gtgtGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTcgc < 2:593691/150‑1 (MQ=255) gtgtGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTcgc < 2:1607708/150‑1 (MQ=255) tgtgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTcgcg > 1:2397264/1‑150 (MQ=255) tgtgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTcgcg > 2:3067823/1‑150 (MQ=255) gtgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCgg < 2:2397264/150‑1 (MQ=255) gtgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCgg < 1:1141055/150‑1 (MQ=255) tgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCggg > 2:701726/1‑150 (MQ=255) tgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCggg > 1:2705061/1‑150 (MQ=255) gggTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGga < 2:249866/118‑1 (MQ=255) gggTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGga > 1:249866/1‑118 (MQ=255) gggTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTa > 2:2380275/1‑150 (MQ=255) gTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTaaa < 2:525782/150‑1 (MQ=255) tttCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAAc < 1:1653827/150‑1 (MQ=255) tttCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAAc < 1:119323/150‑1 (MQ=255) cccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGc < 1:487167/150‑1 (MQ=255) ccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGa > 2:128828/1‑94 (MQ=35) ccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGa < 1:128828/94‑1 (MQ=35) ccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCt > 2:1604027/1‑150 (MQ=255) ccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCt > 2:692783/1‑150 (MQ=255) ccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCt > 2:1241365/1‑150 (MQ=255) ccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACAAGTGCTGATGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCt > 1:2491501/1‑150 (MQ=18) cATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTg > 1:143706/1‑91 (MQ=33) cATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTg < 2:143706/91‑1 (MQ=33) aTGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTcc > 2:1480977/1‑150 (MQ=255) gtgAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGgaga < 2:1738579/108‑1 (MQ=255) gtgAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGgaga > 1:1738579/1‑108 (MQ=255) gtgAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTa > 2:1216524/1‑150 (MQ=255) tgAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTcgcg > 2:1872871/1‑133 (MQ=255) tgAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTcgcg < 1:1872871/133‑1 (MQ=255) gagTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACaga < 1:282668/150‑1 (MQ=255) gagTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACaga > 1:2194400/1‑150 (MQ=255) gagTAGGTCAGCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACaga > 2:2348467/1‑150 (MQ=255) agTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGC‑AACGCGTAGGTGTGGAAAAAATTGGACCTTCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACagag < 1:2994396/150‑1 (MQ=21) gTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAAtt > 2:2062496/1‑81 (MQ=32) tAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGGACGCACCGAGACGC‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGa < 2:1617563/150‑1 (MQ=25) gaGGTCATCGTCAAGATTCTTTTCGCGTTGCGCTTACCTGCGC‑GGTGGGGGGTGGTGTTTGTCGTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGa < 2:809306/149‑1 (MQ=21) aGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGgaga > 1:1553340/1‑100 (MQ=255) gTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTcgcg > 1:956855/1‑124 (MQ=255) aTCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTGCTACAGAGGATGGTGc < 2:758963/150‑1 (MQ=255) gTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGaa < 2:357046/150‑1 (MQ=255) tCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTa < 2:1578965/133‑1 (MQ=255) tCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTa > 1:1578965/1‑133 (MQ=255) tCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAg > 2:102992/1‑150 (MQ=255) cAAGATTCATTTCGCAAAACCCCTATCTGCACACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGc < 1:2380275/150‑1 (MQ=255) gATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAg < 2:1172009/150‑1 (MQ=255) aTTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAgg > 1:197412/1‑150 (MQ=255) acaaagacAAAACCCCTACCTGCGTGCGCAGATAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTa > 1:2404636/8‑150 (MQ=38) tttCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCgaga < 1:1117250/74‑1 (MQ=255) tttCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCgaga > 2:1117250/1‑74 (MQ=255) tttCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGa > 2:1926459/1‑150 (MQ=255) cGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATg > 1:832489/1‑150 (MQ=255) cAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGACTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGc < 1:340588/150‑1 (MQ=255) aaaaCCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGgaga > 2:2999594/1‑75 (MQ=255) aaaaCCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGgaga < 1:2999594/75‑1 (MQ=255) aaaaCCCCTACCTGCGTGCGCAGATAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTcgcg > 1:1289549/1‑101 (MQ=37) aaaaCCCCTACCTGCGTGCGCAGATAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTcgcg < 2:1289549/101‑1 (MQ=37) aaCCCCTACCTGCGTGCGCAGATAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTc > 1:2292458/1‑150 (MQ=38) cccTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTg > 2:1586794/1‑50 (MQ=38) cccTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTg < 1:1586794/50‑1 (MQ=38) cccTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCg < 1:215577/87‑1 (MQ=255) cccTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACaga < 1:671275/116‑1 (MQ=255) cccTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACaga > 2:671275/1‑116 (MQ=255) cTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTTTACCCGcgaaca < 1:2569059/110‑6 (MQ=25) cTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTCGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTCAACgc > 2:2580515/1‑150 (MQ=255) tATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTCAACgca < 1:2348467/150‑1 (MQ=255) tATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTCAACgca > 2:2212328/1‑150 (MQ=255) aTCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTCAACgcag < 1:212161/150‑1 (MQ=255) aTCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTCAACgcag < 1:45488/150‑1 (MQ=255) | TGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCACGCAGGTAGGGGT‑TTTGTCTTTGTGGGCAAAAAATTGGACCTGCTCGAGAGCGGAGATGGCACCGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGAGGATGGTGCGAAGCCAGGCTAGAATGGCCTCAACGCAG > NC_002947/1330387‑1330642 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |