| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,582,829 | T→G | 7.3% | intergenic (‑233/‑25) | ttgA ← / → ttgR | efflux pump periplasmic linker TtgA/HTH‑type transcriptional regulator TtgR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,582,829 | 0 | T | G | 7.3% | 302.3 / 14.9 | 109 | intergenic (‑233/‑25) | ttgA/ttgR | efflux pump periplasmic linker TtgA/HTH‑type transcriptional regulator TtgR |
| Reads supporting (aligned to +/- strand): ref base T (55/46); new base G (4/4); total (59/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.11e-01 | |||||||||||
Only 100 of 116 total aligned reads displayed.
TAAATAGCTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGACATCGCCGAACTGGCGG > NC_002947/1582680‑1582977 | aTAGCTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCgg > 1:3001497/1‑150 (MQ=255) aGCTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGc > 1:2722815/1‑150 (MQ=255) cTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCa < 2:2594733/150‑1 (MQ=255) gCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGAt < 2:2722815/150‑1 (MQ=255) taCTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACt < 2:1502574/150‑1 (MQ=255) aCTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTg > 1:2406520/1‑150 (MQ=255) ttACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGa < 1:342839/135‑1 (MQ=255) ttACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGa > 2:342839/1‑135 (MQ=255) tACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCa > 2:1147031/1‑150 (MQ=255) tCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTc > 1:1470376/1‑150 (MQ=255) tGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑t < 1:25296/150‑1 (MQ=255) ttgtttgtAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGa < 1:1518346/150‑1 (MQ=255) gtttgtAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACt < 1:1126339/133‑1 (MQ=255) gtttgtAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACt > 2:1126339/1‑133 (MQ=255) tAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAaag > 2:1906427/1‑150 (MQ=255) ctgGGTGGTACTCACGTACAGCCTCAGCGCTTTATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCTCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGccc < 1:2949810/150‑1 (MQ=255) tggtACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGGTGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGaa > 2:2058470/1‑150 (MQ=255) aCTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAAccc > 2:2900653/1‑150 (MQ=255) tCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCGGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCAAGGAAACCGGt > 2:2228373/1‑150 (MQ=255) tCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCATAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGt > 1:1305854/1‑150 (MQ=255) tCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCa < 1:253686/94‑1 (MQ=255) tCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGt < 1:36182/150‑1 (MQ=255) tCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGt < 1:1906427/150‑1 (MQ=255) cAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑Tc > 2:1298211/1‑120 (MQ=255) cAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTg < 1:2900653/150‑1 (MQ=255) aGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCa < 1:2454526/138‑1 (MQ=255) aGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCa > 2:2454526/1‑138 (MQ=255) aGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGAACGCGCAGCGCGTGCggg > 1:1743865/1‑89 (MQ=39) aGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGAACGCGCAGCGCGTGCggg < 2:1743865/89‑1 (MQ=39) ggTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGcc < 2:733001/150‑1 (MQ=255) ccTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGatca > 1:1556673/1‑150 (MQ=255) ccTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCACGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGatca > 2:1295132/1‑150 (MQ=255) cTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGatcat > 1:473077/1‑150 (MQ=255) cTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGatcat > 1:1866221/1‑150 (MQ=255) cTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGatcat > 2:2758825/1‑150 (MQ=255) tCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAaagaagaa > 1:1710649/1‑123 (MQ=255) tCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAaagaagaa < 2:1710649/123‑1 (MQ=255) tCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAg < 2:113578/129‑1 (MQ=255) tCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAg > 1:113578/1‑129 (MQ=255) aGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAaagaagaa < 1:735786/121‑1 (MQ=255) aGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAaagaagaa > 2:735786/1‑121 (MQ=255) cgcTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAgg > 2:164963/1‑150 (MQ=255) cTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAg < 2:2888565/123‑1 (MQ=255) cTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAg > 1:2888565/1‑123 (MQ=255) ttGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCAAGACAATCGAggccg > 1:2350606/1‑148 (MQ=255) gATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAAccc < 2:1351522/127‑1 (MQ=255) gATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAAccc > 1:1351522/1‑127 (MQ=255) aTTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGatcatc < 1:2356805/140‑1 (MQ=255) aTTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGatcatc > 2:2356805/1‑140 (MQ=255) gCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAg < 2:1866221/150‑1 (MQ=255) cTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAgg < 2:473077/150‑1 (MQ=255) ttATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAggg < 2:1996099/150‑1 (MQ=255) tATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGc > 1:762904/1‑150 (MQ=255) ccGAGAGGCCCCGGCCGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAATAAGCCCAGGAAACCCGTGCCCAGATCATCGCGGCCGCGGACACGGCCtt > 2:783715/1‑150 (MQ=255) ccGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTTCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAgg > 1:205571/1‑145 (MQ=255) ccGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAgg < 2:205571/145‑1 (MQ=255) gagaGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGatcatc < 1:444590/128‑1 (MQ=255) gagaGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGatcatc > 2:444590/1‑128 (MQ=255) gagaGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCt > 1:1060930/1‑150 (MQ=255) agagGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGGGGTTGTACTGCCATGGTCCG‑t > 2:2382165/1‑85 (MQ=255) agagGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGGGGTTGTACTGCCATGGTCCG‑t < 1:2382165/85‑1 (MQ=255) gCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCa < 1:3007778/101‑1 (MQ=255) gCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCa > 2:3007778/1‑101 (MQ=255) gCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAg > 1:1289956/1‑150 (MQ=255) ccccGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCa > 2:142728/1‑100 (MQ=255) ccccGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCa < 1:142728/100‑1 (MQ=255) cccGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAgcg > 1:456765/1‑150 (MQ=255) cccGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAgcg > 2:2076397/1‑150 (MQ=255) ccGGCAGAGGGGCCCCCGGAGCTTTCCACGCAGGCGCTGCTCGTTCGGGCCAGATGCGGTTGTACTGCGATGGTCCG‑TCGAACCAAAGAAGAACCCCAGGAAACCCGTAGCCAAAGCATCGAAGTGCCGGAAAGGCCCTTCTACAAgcgc < 2:1305854/150‑1 (MQ=255) cGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGcgcg > 1:2327158/1‑150 (MQ=255) cAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCgggg < 2:2406520/150‑1 (MQ=255) gagGTGCCCCCGGAGCGTTCCCCGCACGCGCGGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑ACGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGtt < 1:1147031/150‑1 (MQ=255) cccGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGCTCATCGAGGCGGCGGAAAGGGCCTTCTa < 1:2079383/129‑1 (MQ=255) cccGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTa > 2:2079383/1‑129 (MQ=255) ggAGCGTTCCCCACATGGGCTGCGCGTTCGGGCCAGATGAGGTTGAACT‑CCACTATCCGATCGCCAGCGTGCAGGTTCCCACGAAACCCCGCCCCAAATCATCGAGGCGGCGGATAGAGCCTTCTACAAGCGCGGGGTTGCGCGAaccac < 1:2228373/150‑1 (MQ=255) gTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTgg > 2:2227261/1‑150 (MQ=255) ttCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGc > 1:1325346/1‑150 (MQ=255) tggcccGAACGCGCAGCGCGTGCGGGCCAGATGCGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGc > 2:1038707/4‑150 (MQ=255) tggcccGAACGCGCAGCGCGTGCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCGTCGAGGCGGCGGa < 2:884346/105‑1 (MQ=255) tggcccGAACGCGCAGCGCGTGCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCGTCGAGGCGGCGGa > 1:884346/4‑108 (MQ=255) tCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGcc < 1:2758825/150‑1 (MQ=255) cccGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGa > 1:2679655/1‑150 (MQ=255) ccGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGa < 1:3029647/88‑1 (MQ=255) ccGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGAc > 2:747852/1‑150 (MQ=255) cGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGACa > 1:2011934/1‑150 (MQ=255) cACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGACATc < 2:378256/150‑1 (MQ=255) aCGCGCAGCGCGTGCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAAccc < 2:819285/75‑1 (MQ=255) aCGCGCAGCGCGTGCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAAccc > 1:819285/1‑75 (MQ=255) tGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAaagaagaa < 1:1184331/56‑1 (MQ=255) tGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGaaa < 1:2415965/66‑1 (MQ=255) tGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGaaa > 2:2415965/1‑66 (MQ=255) tGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCtt > 1:455612/1‑103 (MQ=255) tGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCtt < 2:455612/103‑1 (MQ=255) tGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGACATCGCCGAAc < 1:1295132/150‑1 (MQ=255) gTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGACATCGCCGAACTGGCg < 1:2058470/150‑1 (MQ=255) ttCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGACATCGCCGAACTGGCgg < 2:456765/150‑1 (MQ=255) ttCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGACATCGCCGAACTGGCgg > 1:815085/1‑150 (MQ=255) ttCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGACATCGCCGAACTGGCgg < 2:1289956/150‑1 (MQ=255) ttCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTGGCGCGAACCACCCTGGCCGACATCGCCGAACTGGCgg > 1:2298611/1‑150 (MQ=255) ttCGGGCCAGATGAGGTTGGACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGACATCGCCGAACTGGCgg > 2:209128/1‑150 (MQ=255) | TAAATAGCTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACTGCTGGGTGGTACTCAGGTACAGCCTCAGCGCTTGATTAGCTTATCCGAGAGGCCCCGGCAGAGGTGCCCCCGGAGCGTTCCCCGCACGCGCTGCGCGTTCGGGCCAGATGAGGTTGTACTGCCATGGTCCG‑TCGAACCAAAGAAGAAGCCCAGGAAACCCGTGCCCAGATCATCGAGGCGGCGGAAAGGGCCTTCTACAAGCGCGGGGTTGCGCGAACCACCCTGGCCGACATCGCCGAACTGGCGG > NC_002947/1582680‑1582977 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |