| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,008,356 | A→G | 5.9% | M261T (ATG→ACG) | PP_2628 ← | ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,008,356 | 0 | A | G | 5.9% | 409.5 / 9.4 | 135 | M261T (ATG→ACG) | PP_2628 | ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base A (53/74); new base G (3/5); total (56/79) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.11e-01 | |||||||||||
Only 100 of 137 total aligned reads displayed.
TTTCGAACTGGCTCACCAGGCGCATCTGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGTTTCAGGGCAAAGCCGCCGGCCAGGGCAATGATCGCGATG > NC_002947/3008207‑3008505 | tttCGAACTGGCTCACCAGGCGCATCTGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCa < 1:768099/150‑1 (MQ=255) tCGAACTGGCTCACCAGGCGCATCTGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATc < 2:87375/150‑1 (MQ=255) tCGAACTGGCTCACCAGGCGCATCTGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGAGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATc < 2:965672/150‑1 (MQ=255) gAACTGGCTCACCAGGCGCATCTGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATcga > 1:1828145/1‑150 (MQ=255) gAACTGGCTCACCAGGCGCATCTGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGATTAATTTTAAGAGTGCGAAA‑ACAGTTTTACCGTGGTGCTGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATcga > 1:2064022/1‑150 (MQ=255) gAACTGGCTCACCAGGCGCATCTGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGAGCTGGGCGGTTGGAGTGCGAAACACA‑TCTTTGCGCGTTTGTTTGGGTGTAAGCGTCAGAAACCCGCCCGGTCATcga > 1:1454815/1‑150 (MQ=255) tGGCTCACCAGGCGCATCTGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCgacgac > 1:2812931/1‑150 (MQ=255) gCTCACCAGGCGCATCTGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCg > 1:325367/1‑150 (MQ=255) tCACCAGGCGCATCTGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCGTCgatgac > 2:319071/1‑146 (MQ=255) tCACCAGGCGCATCTGGCGAAAACCGCCGTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCggg > 1:1620203/1‑150 (MQ=255) ccAGGCGCATCTGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCGTCGATGACCGGGcgg < 2:1360104/150‑3 (MQ=255) ccAGGCGCATCTGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCGTCGATGACCGGGcgg < 2:336370/150‑3 (MQ=255) cAGGCGCATCCGGCGAAAACCGGTCTGATTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCAtt < 2:163374/150‑1 (MQ=255) gcgcATCTGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGc < 2:325367/150‑1 (MQ=255) cATCTGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTg < 1:2567125/150‑1 (MQ=255) aTCTGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTCACCCTCAGCAACCCGCCCGCTCATTGACCACCGGTCAGTTGCCTGc < 2:2968097/150‑1 (MQ=255) cTGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTc < 1:2268132/150‑1 (MQ=255) tGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATc < 2:2753134/126‑1 (MQ=255) tGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATc > 1:2753134/1‑126 (MQ=255) gAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACAGTGGCGATGATGGTGTAAGCGTCAGAAACCCGCACGGTCATCGACGACCGGGCATTGGCCTGCTCCTGcc > 1:1298885/1‑150 (MQ=255) aaaaCCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGccc < 2:1997492/150‑1 (MQ=255) aCCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGAc > 2:725259/1‑150 (MQ=255) aCCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGAc < 1:725259/150‑1 (MQ=255) tCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGc < 2:2259042/150‑1 (MQ=255) aagAAATCTTCCACGGCAGCGCGCTCAAAGGGCGCTTCGCGGTTATACGAGTACG‑CCAGTTTTACCGTGGTGGTGTTGGTGTAAGCGTCAGAAACTCGCCCGGTCATCGACGACCGGGCATTGTCGTACTCCTGCCCCACCCTGCCCacc > 2:430262/3‑148 (MQ=255) aaaTCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTg < 1:314235/141‑1 (MQ=255) aaaTCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCgg < 2:1825710/150‑1 (MQ=255) aaTCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCggg > 2:2249194/1‑150 (MQ=255) aTCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGTTAAA‑CCATTGGGTGCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCgggg < 1:2984986/150‑1 (MQ=255) tCTTCCATTGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCggggg < 2:2064022/150‑1 (MQ=255) tCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCTTGGTGATGTTGGTGTAGGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGa < 1:371843/133‑1 (MQ=255) ttCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGAc < 1:2317594/150‑1 (MQ=255) tCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACg < 2:1454815/150‑1 (MQ=255) cATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGc > 2:2722798/1‑124 (MQ=255) gCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATcgac > 2:2253640/1‑96 (MQ=255) gCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATcgac < 1:2253640/96‑1 (MQ=255) gCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCCCCCTTGCCCAGCCGGGGGACGAAATAc < 1:415662/150‑1 (MQ=255) gcgcAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCAt > 1:2062272/1‑85 (MQ=255) gcgcAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCAt < 2:2062272/85‑1 (MQ=255) gcAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCgg < 2:1491078/129‑1 (MQ=255) aaaGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCaa > 1:2100448/1‑150 (MQ=255) aaaGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCaa < 2:2865408/150‑1 (MQ=255) aGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGc < 2:2812931/150‑1 (MQ=255) aGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGc < 2:1908877/150‑1 (MQ=255) aGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGc < 2:1620203/150‑1 (MQ=255) cgcTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGaa < 1:2388028/150‑1 (MQ=255) ttCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGc > 1:995193/1‑115 (MQ=255) ttCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAg > 1:1858620/1‑150 (MQ=255) cgcgGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCa < 1:1935561/150‑1 (MQ=255) gcgGGTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGAATTGGCCGGCGCCTGCCCGACCTTGCCCACCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCAc < 1:469420/150‑1 (MQ=255) gTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCgg > 1:757188/1‑112 (MQ=255) gTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCgg < 2:757188/112‑1 (MQ=255) gAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAg < 1:1200845/150‑1 (MQ=255) gAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAg > 2:481165/1‑150 (MQ=255) gAGTGCGAAA‑ACAGTGTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAg < 2:1828145/150‑1 (MQ=255) gTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGc > 1:2262566/1‑150 (MQ=255) gAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAg < 1:893256/144‑1 (MQ=255) gAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAg > 2:893256/1‑144 (MQ=255) gAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATg < 2:2412349/150‑1 (MQ=255) cAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAggg < 2:3004011/150‑1 (MQ=255) tttACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGgcagc < 1:293386/150‑1 (MQ=255) ttACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGgcagca < 1:152988/150‑1 (MQ=255) ttACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGgcagca < 2:2005007/150‑1 (MQ=255) ccGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCa < 2:2297098/150‑1 (MQ=255) cGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAg < 2:372261/150‑1 (MQ=255) gtggtgATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGt > 2:3015651/1‑150 (MQ=255) gtggtgATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGt < 1:1512338/150‑1 (MQ=255) tgATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGTTTCa < 2:983829/150‑1 (MQ=255) gtgtAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGTTTCAGGGCAAAg > 2:2536727/1‑150 (MQ=255) gtgtAAGCGGCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGAACGACCCAGGCAATGAAGGGCAGCATCAGTTTCAGGGCAAAg < 1:1481673/150‑1 (MQ=255) tgtAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGACGGGCAGCATCAGTTTCAGGGCAAAgc > 2:1479009/1‑150 (MQ=255) tgtAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGTTTCAGGGCAAAgc > 2:2459658/1‑150 (MQ=255) tgtAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCCTGCCCAGCCgg > 2:2153125/1‑74 (MQ=255) gtAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGTTTCAGGGCAAAgcc < 1:3015651/150‑1 (MQ=255) tAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAgg < 2:2743847/124‑1 (MQ=255) tAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAgg > 1:2743847/1‑124 (MQ=255) aGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGaa > 2:271947/1‑99 (MQ=255) aGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGaa < 1:271947/99‑1 (MQ=255) tCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGTTTCAgg > 1:1431609/1‑135 (MQ=255) tCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGTTTCAgg < 2:1431609/135‑1 (MQ=255) aaaCCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCaa > 1:1978596/1‑85 (MQ=255) aaaCCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCaa < 2:1978596/85‑1 (MQ=255) caatgcccgGTCGTCGATGACCGGGCGTTGGCCTGCTCCTGCCCGACCTTGCCCAGGCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGgca > 2:1989727/5‑115 (MQ=255) caatgcccgGTCGTCGATGACCGGGCGTTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGgca < 1:1989727/111‑1 (MQ=255) aCCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGTTTCAGGGCaaa > 2:1936700/1‑134 (MQ=255) aCCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGTTTCAGGGCaaa < 1:1936700/134‑1 (MQ=255) cccgcccgGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGTTTCAGGGCAAAGCCGCCGGCCAGGGCaa > 2:886261/1‑150 (MQ=255) ccgcccgGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGTTTCAGGGCAAAGCCGCCGGCCAGGGCAAt < 2:2155504/150‑1 (MQ=255) ccgcccgGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGTTTCAGGGCAAAGCCGCCGGCCAGGGCAAt > 1:2155504/1‑150 (MQ=255) ccgcccgGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGAACATCGCGGTCAATGAAGGGCAGCATCAGTTTCAGGGCAAAGCCGCCGGCCAGGGCAAt < 2:273065/150‑1 (MQ=255) gcccgGTCGTCGATGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAgg < 2:2765610/108‑1 (MQ=255) gcccgGTCGTCGATGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAgg > 1:2765610/1‑108 (MQ=255) gcccgGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAgg < 1:2215059/99‑1 (MQ=255) ccgGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGTTTCAGGGCAAAGCAGCCGGCCAGGGCAATGATc < 1:2081357/150‑1 (MQ=255) ggTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGaa < 2:1318818/102‑1 (MQ=255) ggTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGaa > 1:1318818/1‑102 (MQ=255) tCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGTTTCAGGGCAAAGCCGCCGGCCAg < 1:219701/136‑1 (MQ=255) tCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGTTTCAGGGCAAAGCCGCCGGCCAg > 2:219701/1‑136 (MQ=255) cATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGTTTCAGGGCAAAGCCGCCGGTCAGGGCAATGATCGCGAt < 1:2459658/150‑1 (MQ=255) aTCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGTTTCAGGGCAAAGCCGCCGGCCAGGGCAATGATCGCGATg > 2:235842/1‑150 (MQ=255) | TTTCGAACTGGCTCACCAGGCGCATCTGGCGAAAACCGGTCTGCTTGAAATCTTCCATGGCTGCGCGCGCAAAGTGCGCTTCGCGGTTGGAGTGCGAAA‑ACAGTTTTACCGTGGTGATGTTGGTGTAAGCGTCAGAAACCCGCCCGGTCATCGACGACCGGGCATTGGCCTGCTCCTGCCCGACCTTGCCCAGCCGGGGGACGAAATACAGCATGGCCAAGCCGAACAGCACGACCCAGGCAATGAAGGGCAGCATCAGTTTCAGGGCAAAGCCGCCGGCCAGGGCAATGATCGCGATG > NC_002947/3008207‑3008505 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |