| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,053,264 | G→A | 6.1% | intergenic (+22/+24) | PP_2664 → / ← agmR | two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,053,264 | 0 | G | A | 6.1% | 283.3 / 5.5 | 98 | intergenic (+22/+24) | PP_2664/agmR | two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator |
| Reads supporting (aligned to +/- strand): ref base G (50/41); new base A (3/3); total (53/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.96e-01 | |||||||||||
AACTACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGCGATG > NC_002947/3053120‑3053411 | aaCTACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCcg > 2:1135985/1‑150 (MQ=255) aCAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGaa < 2:1395777/150‑1 (MQ=255) cAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAg < 2:2264068/150‑1 (MQ=255) aGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGATCAACCCGCGAAGc < 1:3037568/150‑1 (MQ=255) gCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCg > 2:1943546/1‑150 (MQ=255) gCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGCCCGCTTCGCGACCTGATCCGCCAAGCg > 2:953378/1‑150 (MQ=255) cAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCgg > 2:2597402/1‑150 (MQ=255) cAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCgg > 2:1362502/1‑150 (MQ=255) ctcAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAAc > 1:1085953/1‑150 (MQ=255) tcAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACa > 1:166662/1‑150 (MQ=255) cAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAg > 1:1530956/1‑150 (MQ=255) aaGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGc > 2:2180302/1‑150 (MQ=255) gcagcaGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCTCGGGTTGATCCGCGAAGCGGCCGGAACAGCTc > 2:1716888/1‑150 (MQ=255) agcagATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCATCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCaa > 1:1993697/1‑150 (MQ=255) cagATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACg < 2:166662/150‑1 (MQ=255) agATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACgg < 2:2350924/150‑1 (MQ=255) agATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACgg > 1:1382229/1‑150 (MQ=255) gATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCTCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGgc < 1:1716888/150‑1 (MQ=255) aTCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGgcg < 1:1943546/150‑1 (MQ=255) gcgAACTGGGTCACACGCTGATGCACAATCCCGTAAGACCGATGAAACTCAAGGCGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGGCGTTTCGCGGGGTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGa > 1:1441199/1‑150 (MQ=255) gcgAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGa > 1:668566/1‑150 (MQ=255) aCTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGAtcac < 1:1362502/150‑4 (MQ=255) tGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCa < 2:1356189/150‑1 (MQ=255) tGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCa > 1:1356189/1‑150 (MQ=255) gggTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAg < 1:2029030/150‑1 (MQ=255) gggTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAg < 2:235960/150‑1 (MQ=255) tCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCTGATAATCAGCaa > 2:1473778/1‑150 (MQ=255) tCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCaa > 1:1457794/1‑150 (MQ=255) tCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGCTGATCCGCGAAACGCCCGGAACAGCTCAACGGCGCAGATAATCAGCaa > 2:1874391/1‑150 (MQ=255) cacGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAAt > 1:781346/1‑150 (MQ=255) acGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATc < 2:1530956/150‑1 (MQ=255) gCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGa < 1:2597402/150‑1 (MQ=255) cTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGat < 1:2180302/150‑1 (MQ=255) cTGATGAACCAGCCCGTAAGACCGATGAAACTCAAGACGTCGATGAGCCATCTGCTGGCCAGTGGATAGGGATAGTGCTCGGCCGCTTGGCGTGTTGATCCGGGAGGTGTCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGat < 2:2651448/150‑1 (MQ=255) cacaAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGcc < 2:668566/150‑1 (MQ=255) acaAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCa > 1:1613484/1‑150 (MQ=255) caAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAg > 2:2427552/1‑150 (MQ=255) ccccGTAAGACCTATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTCGCTTGTCATAGCAATTGTCCTCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCAc < 1:1135985/149‑1 (MQ=255) ccGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGGCAGGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTg > 1:1574866/1‑150 (MQ=255) tAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAgg > 1:674775/1‑150 (MQ=255) aCCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATgg > 2:2552110/1‑150 (MQ=255) cGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGa > 2:880581/1‑76 (MQ=255) cGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGa < 1:880581/76‑1 (MQ=255) cGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCt > 2:2667977/1‑150 (MQ=255) gATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCtt < 2:1970945/150‑1 (MQ=255) gATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCtt < 2:1085953/150‑1 (MQ=255) gAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTa < 1:2427552/150‑1 (MQ=255) gAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTa > 1:2397523/1‑150 (MQ=255) aaCTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTAcc < 2:38389/150‑1 (MQ=255) aCTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTAccc < 2:1457794/150‑1 (MQ=255) tCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCgg < 1:872252/150‑1 (MQ=255) tCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCgg > 2:2313581/1‑150 (MQ=255) aGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCgg > 2:2563798/1‑80 (MQ=255) aGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCgg < 1:2563798/80‑1 (MQ=255) gcGGCGATGAGCCATCTGCTGGCCCGTGACTTCGCCACGGGGATGTCTTCTTCAGTTTTTTAACCACAAAGCTACTTTAACAGCTCAACAGCACAGATAATCAGAAAAATCGCTATCGCCAGCACTGAGGATGGCTTGTGCCTGGTtgtg < 2:1441199/149‑1 (MQ=255) aCGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGATGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCCGCAAAATCGATATCGCCAGCACTGAGGCTGGCTTGTACCCGGgtgtt > 1:932060/1‑149 (MQ=255) ggCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGca > 2:2151572/1‑150 (MQ=255) ccATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGtt > 2:2364433/1‑150 (MQ=255) aTCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATACGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAACAAAATCGATATCACCAGCACTGAAGATGGCTTGTATCCGGTTGTGCACATTGAGGTTg > 2:152785/1‑150 (MQ=255) aTCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCACCATCGCGAGTAGCTACGCCCAGCGGCAGGAACAGCTCAACTGCACAAATAATCAGGAAAAGCGATATGGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTg > 2:1122414/1‑150 (MQ=255) tCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTgc < 2:2028009/150‑1 (MQ=255) tCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTgc < 1:2667977/150‑1 (MQ=255) ctgGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCaa > 2:33838/1‑150 (MQ=255) ccAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGTTTGTTCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATc < 2:2255567/150‑1 (MQ=255) aGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGc < 1:33838/150‑1 (MQ=255) tGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCg > 1:557528/1‑150 (MQ=255) cTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGaaa > 2:3026678/1‑150 (MQ=255) ttGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCtt < 2:2550088/107‑1 (MQ=255) ttGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCtt > 1:2550088/1‑107 (MQ=255) ttGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTa < 2:2523412/110‑1 (MQ=255) ttGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTa > 1:2523412/1‑110 (MQ=255) gCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTg > 1:566402/1‑150 (MQ=255) cATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTgg < 1:2314026/150‑1 (MQ=255) aTAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTggg > 1:1342524/1‑150 (MQ=255) gCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCtt < 1:1964787/99‑1 (MQ=255) gCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCtt > 2:1964787/1‑99 (MQ=255) gattgggCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCtt > 1:2891790/6‑150 (MQ=255) gtccagCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTg < 1:1872135/145‑1 (MQ=255) gTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGa < 1:2552110/150‑1 (MQ=255) ggCCGCTTCGCGGATCAACCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACgg > 2:1502469/1‑150 (MQ=255) ccGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGat > 1:1441815/1‑68 (MQ=255) ccGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGat < 2:1441815/68‑1 (MQ=255) ccGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGtt < 2:1923347/101‑1 (MQ=255) ccGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGtt > 1:1923347/1‑101 (MQ=255) ccGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggtg < 1:2151572/150‑1 (MQ=255) ccGCTTCGCGGATCAACCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGa > 1:2435837/1‑112 (MQ=38) ccGCTTCGCGGATCAACCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGa < 2:2435837/112‑1 (MQ=38) cGCTTCGCGGGTTGATCCGCGAAGCGTCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggtgg > 1:2845219/1‑150 (MQ=255) cGCTTCGCGGATCAACCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggtgg < 1:1502469/150‑1 (MQ=255) gCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCaaaa < 1:2502156/122‑1 (MQ=255) gCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCaaaa > 2:2502156/1‑122 (MQ=255) gCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggtggt > 2:1170470/1‑150 (MQ=255) gCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggtggt < 1:1874391/150‑1 (MQ=255) gCTTCGCGGATCAACCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCgg > 1:1001542/1‑97 (MQ=38) cgcgGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCg < 2:781346/150‑1 (MQ=255) gcgGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCgg > 1:1659134/1‑150 (MQ=255) gggTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGCg < 2:1993697/150‑1 (MQ=255) ttGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGTTGGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGGGATg > 1:2517391/1‑150 (MQ=255) | AACTACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCGAAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGCGATG > NC_002947/3053120‑3053411 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |