| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,300,206 | T→A | 5.1% | intergenic (+61/+21) | pvdQ → / ← lpxH | acyl‑homoserine lactone acylase PvdQ/UDP‑2,3‑diacylglucosamine hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,300,206 | 0 | T | A | 5.1% | 302.0 / 5.5 | 98 | intergenic (+61/+21) | pvdQ/lpxH | acyl‑homoserine lactone acylase PvdQ/UDP‑2,3‑diacylglucosamine hydrolase |
| Reads supporting (aligned to +/- strand): ref base T (56/36); new base A (3/2); total (60/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01 | |||||||||||
Only 100 of 101 total aligned reads displayed.
TTACCGAGGCGCAGATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCTTGTGAATCG > NC_002947/3300057‑3300354 | ttACCGAGGCGCAGATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCtt < 2:1845486/150‑1 (MQ=255) gcgcAGATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGa < 2:73645/150‑1 (MQ=255) gcgcAGATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGa < 2:2835091/150‑1 (MQ=255) gcgcAGATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGa < 2:2328873/150‑1 (MQ=255) gcgcAGATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGAGGTAGTAAGCCCGCGCTGAGGCGTCAGCTT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGa < 1:371068/150‑1 (MQ=255) gcAGATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTTGCGGGTAAACCCGCTCCTACAGGGCCTC‑GCGGGCAAGCCcgcaggc > 1:333300/1‑146 (MQ=255) tCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTg > 1:820574/1‑150 (MQ=255) cAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGt > 1:636497/1‑150 (MQ=255) ggCAGATCCTGAGTACCGGGAAGTGGTGACCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAAt < 1:144005/150‑1 (MQ=255) gCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATg > 2:2099364/1‑150 (MQ=255) gCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCC‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATg < 1:2093670/150‑1 (MQ=255) cAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGt < 2:3011437/150‑1 (MQ=255) ccTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCGT‑GCGGGCGTTGGCGTGGGG‑CCGTGTAATGTCAGGa > 2:806138/1‑150 (MQ=38) tGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGaaa > 1:1612317/1‑150 (MQ=255) gAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGaaaa > 1:2451673/1‑150 (MQ=255) aGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAAc < 1:806138/150‑1 (MQ=255) tACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTACACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTc < 2:2995798/150‑1 (MQ=255) tACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTc > 2:2930467/1‑150 (MQ=255) tACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTc > 1:1115444/1‑150 (MQ=255) cGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGGAAACTCGaa > 1:1669353/1‑150 (MQ=255) cGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGaa > 2:2029655/1‑150 (MQ=255) gggAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAAc < 2:820574/150‑1 (MQ=255) tggtgATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTg < 1:1694711/123‑1 (MQ=255) tggtgATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTg > 2:1694711/1‑123 (MQ=255) ggtgCTCAGTTAGCGCTACAATGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGGAAACCCGCACCTACAGGGGCCT‑GCGGGCTGTCCCGCGATG‑CCCTGTCATGTCAGGAAAACTAGAACGGCGCCa > 2:762696/1‑150 (MQ=255) ggtgATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCTT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCa > 1:1753343/1‑150 (MQ=255) ggATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAAc < 2:2886268/149‑1 (MQ=255) aTCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGCAAACTCGAACGGCGCCAACTg > 2:919460/1‑150 (MQ=255) aTCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGCACAGCGCAAAATg > 2:1868107/1‑150 (MQ=255) tCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGa > 2:180166/1‑150 (MQ=255) aGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGaaa > 1:2012994/1‑150 (MQ=255) gTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCGGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAg > 2:590521/1‑150 (MQ=255) ggACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGa > 1:21822/1‑100 (MQ=255) ggACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGa < 2:21822/100‑1 (MQ=255) ggACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCt < 1:1409138/106‑1 (MQ=255) ggACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCt > 2:1409138/1‑106 (MQ=255) gACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATg > 2:704204/1‑111 (MQ=255) gACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATg < 1:704204/111‑1 (MQ=255) gACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTc < 2:1725931/150‑1 (MQ=255) gggggCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACA‑GGGCCTCGCGGGCAAGCCCGC‑AGG‑cccctgta > 1:2053081/1‑98 (MQ=21) gggggCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACA‑GGGCCTCGCGGGCAAGCCCGC‑AGG‑cccctgta < 2:2053081/103‑6 (MQ=21) ggggCTGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAAc > 1:2086815/1‑150 (MQ=255) ggggCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAAc < 1:494561/150‑1 (MQ=255) ggCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCt > 2:1239193/1‑150 (MQ=255) ggCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCt < 2:1115444/150‑1 (MQ=255) tAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCCGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAg > 1:1780566/1‑150 (MQ=255) agccagccCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCcgc > 1:374895/1‑79 (MQ=255) agccagccCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCcgc < 2:374895/79‑1 (MQ=255) agccagccCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCa > 1:988419/1‑150 (MQ=255) gccagccCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCaa < 1:2029655/150‑1 (MQ=255) ccagccCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAAc > 2:3028177/1‑150 (MQ=255) ccTGAGGCGTCAGCCTCAGGGCTGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACcgc > 1:2143100/1‑150 (MQ=255) ccTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCgcgg < 2:208086/150‑1 (MQ=255) cTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACg > 2:1294905/1‑102 (MQ=255) cTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACg < 1:1294905/102‑1 (MQ=255) cTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCaa > 2:2308367/1‑129 (MQ=255) cTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCaa < 1:2308367/129‑1 (MQ=255) gCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCgcgg < 2:1103365/144‑1 (MQ=255) gCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCgcgg > 1:1103365/1‑144 (MQ=255) gTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGTCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCa < 1:2930467/150‑1 (MQ=255) gTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCa < 2:2451673/150‑1 (MQ=255) gCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑c > 1:823960/1‑65 (MQ=255) gCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑c < 2:823960/65‑1 (MQ=255) gCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTg > 1:2596071/1‑69 (MQ=255) gCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTg < 2:2596071/69‑1 (MQ=255) ccT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑cc < 2:1316437/65‑1 (MQ=255) ccT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑cc > 1:1316437/1‑65 (MQ=255) cT‑‑GCGCCGGCCCATTCGCGGGTAAACACGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGcc > 1:619679/1‑150 (MQ=255) ccGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCa > 1:3025238/1‑150 (MQ=255) ccGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCa < 1:180166/150‑1 (MQ=255) ccGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCa > 1:1932577/1‑150 (MQ=255) gCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGa > 2:479030/1‑150 (MQ=255) cccATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGc > 1:1147142/1‑117 (MQ=255) cccATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGc < 2:1147142/117‑1 (MQ=255) ccATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGcc > 1:2288024/1‑95 (MQ=255) ccATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGcc < 2:2288024/95‑1 (MQ=255) ccATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATa > 1:718302/1‑150 (MQ=255) aTTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGcc < 1:2245951/93‑1 (MQ=255) aTTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGcc > 2:2245951/1‑93 (MQ=255) ttCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGc > 2:40115/1‑150 (MQ=255) gcgGGTAAACCCGCTCCTACCGGGGCCT‑GCTGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGt > 1:2079447/1‑150 (MQ=255) gcgGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGt > 1:650539/1‑150 (MQ=255) gTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCg > 1:1536480/1‑150 (MQ=255) cccGCTCCTACAGGTGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTGAGTAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCACCCAGCACGATACGCCGTGCCGGCTgg > 1:78165/1‑150 (MQ=255) caggCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTgg > 1:476332/4‑150 (MQ=255) ccGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTg > 2:2822675/1‑148 (MQ=255) ccGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTg < 1:2822675/148‑1 (MQ=255) ccGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGc > 1:2686186/1‑150 (MQ=255) tgacattACAGGGCCTC‑GCGGGCAAGCCCGC‑AGGCCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGt < 1:1261788/133‑1 (MQ=37) ccTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCg > 2:2919159/1‑150 (MQ=255) cTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATa > 1:123662/1‑128 (MQ=255) cTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATa < 2:123662/128‑1 (MQ=255) cTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGa > 1:1629885/1‑150 (MQ=255) agggCCTCGCGGGCAAGCCCGC‑AGGCCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCAt > 2:1588731/2‑150 (MQ=255) gggCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGCCGCGCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCa > 1:1722763/1‑150 (MQ=255) ccT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCt > 2:2318057/1‑150 (MQ=255) cT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCtt > 2:2196785/1‑150 (MQ=255) gCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCTtgt > 1:2273407/1‑150 (MQ=255) ttGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCTTGTGAATCg > 1:2285731/1‑150 (MQ=255) ttGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCTTGTGAATCg > 2:1880119/1‑150 (MQ=255) | TTACCGAGGCGCAGATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCT‑‑GCGCCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCTTGTGAATCG > NC_002947/3300057‑3300354 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |