| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,380,587 | C→T | 6.6% | V72V (GTC→GTT) | tnpT‑I → | cointegrate resolution protein T |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,380,587 | 0 | C | T | 6.6% | 308.9 / 9.1 | 106 | V72V (GTC→GTT) | tnpT‑I | cointegrate resolution protein T |
| Reads supporting (aligned to +/- strand): ref base C (50/49); new base T (3/4); total (53/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.94e-01 | |||||||||||
Only 100 of 107 total aligned reads displayed.
GAGAACCCAAGCATCGACGCGGTACGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGC > NC_002947/3380438‑3380735 | gagaACCCAAGCATCGACGCGGTACGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATCCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACCGTTGGCCAACCTGGTc < 2:2492581/150‑1 (MQ=255) cccAAGCATCGACGCGGTACGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGAGACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGccg > 2:211412/1‑149 (MQ=255) ccAAGCATCGACGCGGTACGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCGACCAGGTTGGCCaa < 1:827281/150‑1 (MQ=255) aaGCATCGACGCGGTACGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAAcc > 2:254622/1‑149 (MQ=255) aGCATCGACGCGGTACGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTg < 2:2516195/150‑1 (MQ=255) cgGTACGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTTAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGc < 2:537820/150‑1 (MQ=255) tACGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTag < 1:1846265/150‑1 (MQ=255) aCGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTaga < 2:1777379/150‑1 (MQ=255) ggTCGAACTTGGCACTACCGGCTCGAAAACCACCCTTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCAAAATACCGCCGCCTGACCGCTCAGCGAACAGTTGGCCACCCTGGTCGGCCAACTGGCAG‑ATCAGCTAgagga < 1:69135/150‑1 (MQ=255) ggTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGTCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAgagga < 2:2163125/150‑1 (MQ=255) ggTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAgagga < 1:2722109/150‑1 (MQ=255) gTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCaa < 2:759816/129‑1 (MQ=255) gTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCaa > 1:759816/1‑129 (MQ=255) gTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAgaggag > 1:166873/1‑150 (MQ=255) tagAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGaggagg < 1:646688/148‑1 (MQ=255) tCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCGACCAGGTTGGCCaa < 2:1219813/128‑1 (MQ=255) tCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCGACCAGGTTGGCCaa > 1:1219813/1‑128 (MQ=255) tCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGaggagg > 2:1625096/1‑150 (MQ=255) tCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGaggagg > 1:1325515/1‑150 (MQ=255) aaCTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATg > 2:2602267/1‑150 (MQ=255) aCTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATgc > 2:712373/1‑150 (MQ=255) ttGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGc < 1:212937/135‑1 (MQ=255) ttGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGc > 2:212937/1‑135 (MQ=255) ttGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATgcgc < 2:2332296/150‑1 (MQ=255) gCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAgg < 1:184959/150‑1 (MQ=255) aCCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCAcc < 2:2724055/150‑1 (MQ=255) cGGCTCGAAAACCACCATTCACCGCCACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCaa < 2:1729222/112‑1 (MQ=255) ggCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTg < 2:368724/150‑1 (MQ=255) gCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTgg > 1:1545394/1‑150 (MQ=255) gCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTgg > 2:401266/1‑150 (MQ=255) gCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTgg > 2:1692984/1‑150 (MQ=255) gCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTgg > 2:2210066/1‑150 (MQ=255) tCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGcc > 1:669437/1‑150 (MQ=255) aaaaCCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTa < 2:1553025/120‑1 (MQ=255) aaaaCCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTa > 1:1553025/1‑120 (MQ=255) aaaaCCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAg < 2:1345931/150‑1 (MQ=255) caccaTTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAgcg > 2:2557777/1‑150 (MQ=255) caccaTTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAgcg > 2:2944271/1‑150 (MQ=255) accaTTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCa > 1:276958/1‑105 (MQ=255) accaTTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAgcgc < 2:669437/150‑1 (MQ=255) aTTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATc < 1:2345343/106‑1 (MQ=255) aTTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATc > 2:2345343/1‑106 (MQ=255) ttCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGaac > 1:501052/1‑150 (MQ=255) aCCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCGACCAGGTTGGCCAACTgttc > 1:1579446/1‑95 (MQ=38) aCCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCGACCAGGTTGGCCAACTgttc < 2:1579446/98‑4 (MQ=38) aCCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTgg > 2:2751237/1‑132 (MQ=255) aCCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTgg < 1:2751237/132‑1 (MQ=255) gCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTAc < 1:1604286/150‑1 (MQ=255) cTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAAcgc > 2:527495/1‑150 (MQ=255) cTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAAcgc < 1:2557777/150‑1 (MQ=255) cTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACCGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAAcgc > 2:2150886/1‑150 (MQ=255) tGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAAcgcg > 1:1131719/1‑150 (MQ=255) gAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAg < 1:1718728/112‑1 (MQ=255) gAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAg > 2:1718728/1‑112 (MQ=255) aaGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCa > 2:71835/1‑114 (MQ=255) aaGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCa < 1:71835/114‑1 (MQ=255) tCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACt > 1:2646549/1‑133 (MQ=255) tCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACt < 2:2646549/133‑1 (MQ=255) gAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACGGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGAt > 1:2478287/1‑150 (MQ=255) gAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGAt > 1:2496462/1‑150 (MQ=255) aCGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTAcc < 2:166873/150‑1 (MQ=255) cGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCgg > 1:1503731/1‑150 (MQ=255) tACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGc < 2:2496462/150‑1 (MQ=255) cgccgcGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGa > 2:2168693/1‑150 (MQ=255) gccgcGATACCGCTCAGCGAAAAGTTCGGCAAGCTGCGCGGCTAAAT‑GCAGTGGGAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGaa > 1:1158400/1‑150 (MQ=255) ccgcGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGaacaa > 2:285731/1‑101 (MQ=255) ccgcGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGaacaa < 1:285731/101‑1 (MQ=255) ccgcGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTc < 1:2342930/119‑1 (MQ=255) gcgATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGc < 2:1445969/39‑1 (MQ=255) gcgATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGc > 1:1445969/1‑39 (MQ=255) cgATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGATAGAGGGGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGcc > 2:1258474/1‑150 (MQ=255) aTACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCCCCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGa > 1:1906602/1‑150 (MQ=255) cAGCGAACAGTTGGCGAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCcagca < 2:1158400/150‑1 (MQ=255) cAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCcagca < 2:2133490/150‑1 (MQ=255) cGAAAAGTTGGCCAACCTGATCGAACAACTGGAAG‑ATCAGCTAGAGGAGGATGCGCAGGCAACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAAAACCAAAAACGAATGGTCGAAACCCGAATCcagcagga < 2:1264436/150‑3 (MQ=255) tgccAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTg > 1:240673/4‑150 (MQ=255) gAACAGTTGGCCAACCTGGTCGGCCCACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTg < 1:211412/150‑1 (MQ=255) aaCAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTgg < 2:2701613/150‑1 (MQ=255) aggtGGCCAACCTGGTCGGCCACCTGGGTT‑GGCAGATAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGaaa < 1:780254/147‑1 (MQ=255) aGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCcagca > 1:2454394/1‑142 (MQ=255) aGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCcagca < 2:2454394/142‑1 (MQ=255) aGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCGCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGaaa > 1:529589/1‑150 (MQ=255) gTTGGCCGACCAGGTTGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCa < 1:2944719/105‑1 (MQ=255) gTTGGCCGACCAGGTTGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCa > 2:2944719/1‑105 (MQ=255) ttGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGcc > 1:1323700/1‑130 (MQ=255) ttGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGcc < 2:1323700/130‑1 (MQ=255) ttGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGt < 1:401266/150‑1 (MQ=255) ttGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGt > 1:2903264/1‑150 (MQ=255) ggCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCa < 1:1625096/150‑1 (MQ=255) ggCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGAGAACAACTACAACGCGAACGGCTCGa > 2:582613/1‑96 (MQ=255) ggCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGAGAACAACTACAACGCGAACGGCTCGa < 1:582613/96‑1 (MQ=255) ccAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCaga < 2:2712132/150‑1 (MQ=255) ccAACCTGGGCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGACAGTCaga < 2:2903264/150‑1 (MQ=255) aaCCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGACGAAAGCCGAATCCAGCAGTTGGAAAGTCAGagc > 2:26441/1‑150 (MQ=255) aCCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGagca < 2:501052/150‑1 (MQ=255) ccTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGagcag > 1:1027081/1‑150 (MQ=255) cTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAATGTCAGagcagc < 1:2944271/150‑1 (MQ=255) gTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCggg < 2:1131719/150‑1 (MQ=255) gTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCggg < 2:1503731/150‑1 (MQ=255) tCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGc > 1:2368325/1‑150 (MQ=255) | GAGAACCCAAGCATCGACGCGGTACGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAG‑ATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCGGGC > NC_002947/3380438‑3380735 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |