| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,878,872 | G→C | 6.0% | Q221H (CAG→CAC) | mexF → | multidrug RND transporter MexF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,878,872 | 0 | G | C | 6.0% | 365.6 / 10.0 | 114 | Q221H (CAG→CAC) | mexF | multidrug RND transporter MexF |
| Reads supporting (aligned to +/- strand): ref base G (50/57); new base C (2/5); total (52/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 114 total aligned reads displayed.
GGCGTAGGCGACGTGCAGCTGTTTGGCATGGGCGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGG > NC_002947/3878726‑3879020 | ggcgTAGGCGACGTGCAGCTGTTTGGCATGGGCGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTg > 1:1019250/1‑150 (MQ=255) gcgTAGGCGACGTGCAGCTGTTTGGCATGGGCGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGTCGGCCAGTGATGTGGTCGCGGCAATCCGCGAG‑AGATACTG‑CCAGCTGGCTGGCGGCCACCTgg < 1:80187/150‑1 (MQ=255) gcgTAGGCGACGTGCAGCTGTTTGGCATGGGCGACTACTCGCTGCGCGTCTGGCTGGACACGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTgg < 2:2486841/150‑1 (MQ=255) ggTTTGGCATGGGCACATAACCCCTGCGCGTCTGGCTGCACCAGAACAATACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAg < 2:807564/149‑1 (MQ=255) gTTTGGCATGGGCGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAgg > 1:2477372/1‑150 (MQ=255) tttGGCATGGGCGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGc > 1:2581464/1‑150 (MQ=255) tGGCATGGGCGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTc > 2:1792530/1‑150 (MQ=255) gCATGGGCGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGa < 1:2293520/150‑1 (MQ=255) gCATGGGCGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGa < 1:1669516/150‑1 (MQ=255) tGGGCGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCa > 1:2232509/1‑150 (MQ=255) tGGGCGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCa > 2:2063692/1‑150 (MQ=255) ggCGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGc < 2:2273783/150‑1 (MQ=255) cGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGAAGCCTTCCCCAGGCTCGACCAGCtt > 2:1478076/1‑150 (MQ=255) gACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGc > 2:2895434/1‑131 (MQ=255) gACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGc < 1:2895434/131‑1 (MQ=255) gACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTc > 1:1941070/1‑150 (MQ=255) ctactCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCa > 2:725466/1‑150 (MQ=255) tactCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTggg < 2:1394063/116‑1 (MQ=255) tactCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAg > 1:1060754/1‑150 (MQ=255) tactCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGCTGGCCGGCGGCCACCTggcggtt > 1:1396713/1‑115 (MQ=255) tactCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGCTGGCCGGCGGCCACCTggcggtt < 2:1396713/120‑6 (MQ=255) actCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGc < 2:1941070/150‑1 (MQ=255) ctCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCGCCCAGCTGGCCGGCGGCCACCTggcgg > 1:1144977/1‑114 (MQ=38) ctCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCGCCCAGCTGGCCGGCGGCCACCTggcgg < 2:1144977/117‑4 (MQ=38) ctCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCt > 2:2462095/1‑150 (MQ=255) ctCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGACAGACCAGCTTCCAGCt > 2:2790644/1‑150 (MQ=255) ctCGCTGCGCCTGTGTCGTAACCTGATCAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCt < 2:2477372/150‑1 (MQ=255) tCGCTGCGCGTCTGGCTGGACGCGAACAACACCGCTTCGCGCAACCTGCCGGCCAGTGATGTGGTCGCGGCAATCCACGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTg > 2:1298910/1‑150 (MQ=255) tCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCCGGTGGCCGCCGGCCAGCAGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTg > 1:32739/1‑150 (MQ=255) tCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTg > 1:49327/1‑150 (MQ=255) cGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCCGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGt < 1:2790644/150‑1 (MQ=255) gCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCAGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTc < 2:32739/150‑1 (MQ=255) tGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATACGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGa > 1:2181191/1‑150 (MQ=255) gcgcGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGAt < 1:2937261/150‑1 (MQ=255) cgcgTCTGGCTGGACCCGCACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATc < 1:2462095/150‑1 (MQ=255) gcgTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCa < 2:1019250/150‑1 (MQ=255) ttccgatctggACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCaa < 2:2983574/143‑1 (MQ=255) ctggctggACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATAc < 1:222263/150‑1 (MQ=255) gctggACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCa < 1:2269305/150‑1 (MQ=255) gctggACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCa > 1:1996101/1‑150 (MQ=255) ctggACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCaa < 1:2976631/150‑1 (MQ=255) tggACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAg < 2:2063408/150‑1 (MQ=255) tggACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTAGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAg < 1:2690108/150‑1 (MQ=255) gACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATAccc > 2:1030756/1‑145 (MQ=255) gACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATAccc < 1:1030756/145‑1 (MQ=255) aCCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGgcc > 1:1528384/1‑150 (MQ=255) ccGAACAAGACTGCTTCGCGCAACCTGACGGCCGGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGTTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGgccgc > 1:1413197/1‑150 (MQ=255) ccGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGCTGGCCGGCGGCCACCt < 1:1943613/89‑1 (MQ=255) gAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCt > 2:619818/1‑150 (MQ=255) aaCAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTg < 2:2581464/150‑1 (MQ=255) aCAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTgg < 2:2495411/150‑1 (MQ=255) gACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCaa < 1:2964493/150‑1 (MQ=255) aCCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAAc < 1:1838705/150‑1 (MQ=255) aCCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAAc > 2:1744036/1‑150 (MQ=255) cGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGa < 1:1136330/150‑1 (MQ=255) cGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGa < 1:2063692/150‑1 (MQ=255) cTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCTGGACACCTGGGCGCGCCGCCGGCGCGAGGCTCGACCAGCTTCCAGCTGTCGATCAATGCCCAAGGCCGCCTGGTCAACGAgg < 1:1148125/150‑1 (MQ=255) ttCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGa > 1:1511629/1‑150 (MQ=255) gcgcAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAaga > 1:616519/1‑150 (MQ=255) gcgcAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAaga < 1:337394/150‑1 (MQ=255) cgcAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAagag > 2:1742159/1‑150 (MQ=255) aaCCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTc < 2:2546919/150‑1 (MQ=255) cTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTg < 1:1118393/66‑1 (MQ=255) cTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTg > 2:1118393/1‑66 (MQ=255) tGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGaaa < 2:49327/150‑1 (MQ=255) aCGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAAc < 1:725466/150‑1 (MQ=255) ggCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAg > 1:2595021/1‑80 (MQ=255) ggCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAg < 2:2595021/80‑1 (MQ=255) gCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAg > 2:2429911/1‑96 (MQ=255) gCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAAcatc > 1:1768650/1‑150 (MQ=255) ccAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATGAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAGcatca > 1:2179539/1‑150 (MQ=255) aTGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATcc < 1:889977/150‑1 (MQ=255) ggTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCgcgc < 2:2232509/150‑1 (MQ=255) tCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCg > 1:1653165/1‑150 (MQ=255) cgcgGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCgg < 2:1511629/150‑1 (MQ=255) cgGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTg < 1:889542/150‑1 (MQ=255) aaTCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGa > 2:1865734/1‑150 (MQ=255) aaTCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGa > 2:2207698/1‑150 (MQ=255) tCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGgcc > 1:2656879/1‑96 (MQ=255) tCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGgcc < 2:2656879/96‑1 (MQ=255) tCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATg < 1:1792530/150‑1 (MQ=255) tCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATg > 1:1266310/1‑150 (MQ=255) ccGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGTCGATgg < 2:1060754/150‑1 (MQ=255) cgcgAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCTCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAg > 1:59933/1‑108 (MQ=255) cgcgAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAgg < 2:927281/109‑1 (MQ=255) cgcgAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAgg > 1:927281/1‑109 (MQ=255) cgcgAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAg < 2:59933/108‑1 (MQ=255) gcgAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAg < 2:2791718/107‑1 (MQ=255) gcgAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAg > 1:2791718/1‑107 (MQ=255) aGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCGGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCgaga < 2:193063/150‑1 (MQ=255) aGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCa < 2:141967/150‑1 (MQ=255) ccG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCg > 1:2610634/1‑150 (MQ=255) ggTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGaa < 2:1768650/150‑1 (MQ=255) gTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGTTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGgaa < 1:2891892/150‑1 (MQ=255) gTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGaaa < 2:2048929/150‑1 (MQ=255) gTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGaaa < 1:619818/150‑1 (MQ=255) tGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAg < 1:1478076/150‑1 (MQ=255) ccgccgGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACa < 1:1744036/150‑1 (MQ=255) cgGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGc > 2:2663898/1‑150 (MQ=255) cAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTACCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCgg > 2:2913648/1‑150 (MQ=255) | GGCGTAGGCGACGTGCAGCTGTTTGGCATGGGCGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGA‑ACCG‑CCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGG > NC_002947/3878726‑3879020 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |