Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 337,812 A→G 11.1% intergenic (‑59/+70) PP_0279 ← / ← PP_0280 hypothetical protein/amino acid ABC transporter permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947337,8120AG11.1% 225.6 / 13.5 81intergenic (‑59/+70)PP_0279/PP_0280hypothetical protein/amino acid ABC transporter permease
Reads supporting (aligned to +/- strand):  ref base A (39/33);  new base G (5/4);  total (44/37)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGGTTTCCACAGCTGCTGGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCA  >  NC_002947/337664‑337961
                                                                                                                                                     |                                                                                                                                                       
tggTTTCCACAGCTGCTGGTGCTCGATCAGGAACTGGTCGAGGGAGTGGAAGTTGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGtat                                                                                                                                                        <  2:82100/149‑1 (MQ=255)
 ggTTTCCACAGCTGCTGGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGtata                                                                                                                                                       <  2:2446356/150‑1 (MQ=255)
  gTTTCCACAGCTGCTGGTGCTCGATCAGGGACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGtataa                                                                                                                                                      >  1:82100/1‑149 (MQ=255)
   tttCCACAGCTGCTGGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAgc                                                                                                                                                     >  2:2553775/1‑150 (MQ=255)
       cacaGCTGCTGGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGTGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCca                                                                                                                                                <  1:953913/150‑1 (MQ=255)
        acaGCTGCTGGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCcaa                                                                                                                                               >  1:2560327/1‑149 (MQ=255)
        acaGCTGCTGGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCcac                                                                                                                                              >  1:2903761/1‑150 (MQ=255)
         caGCTGCTGGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCcaca                                                                                                                                             <  1:326715/150‑1 (MQ=255)
               ctgGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAg                                                                                                                                       <  1:76348/150‑1 (MQ=255)
                 ggTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGt                                                                                                                                     <  2:358157/150‑1 (MQ=255)
                 ggTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGt                                                                                                                                     <  2:1036292/150‑1 (MQ=255)
                  gTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGtt                                                                                                                                    <  2:2763934/150‑1 (MQ=255)
                     cTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGgc                                                                                                                                 >  2:2153963/1‑150 (MQ=255)
                       cGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGgcgc                                                                                                                               <  1:2153963/150‑1 (MQ=255)
                            aGGAACTGGTCGAGGGCCTGGCAGCGGGTGCCTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACac                                                                                                                          >  2:502287‑M2/1‑148 (MQ=255)
                                aCTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCCTCCTTGCTCCCACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATacctgt                                                                                                                      >  1:1329607‑M2/1‑144 (MQ=255)
                                aCTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgt                                                                                                                      >  2:2903761‑M2/1‑144 (MQ=255)
                                  tGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgg                                                                                                                    >  2:2516966‑M2/1‑142 (MQ=255)
                                  gggTCGAGGGCTTGGAAGCGGGTGCTTAGGTGGGGGGTGTGGAGGTGGTTGGGAATGATCCGGACCTTGGCAGTTTTCGGGGGCCTCTTCGCGGGCACGCCGGCTCCCATAGGTATAGGGCCACATTCAAGGTTGGCGCTACACCTGTgg                                                                                                                    <  1:699959/149‑1 (MQ=255)
                                        aGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgg                                                                                                              >  1:2553775‑M2/1‑136 (MQ=255)
                                         gggCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcggg                                                                                                             >  2:284506‑M2/1‑135 (MQ=255)
                                                gAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGgc                                                                                                                                 >  1:3012143/1‑123 (MQ=255)
                                                gAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGgc                                                                                                                                 <  2:3012143/123‑1 (MQ=255)
                                                gAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgccc                                                                                                      >  1:801819‑M2/1‑128 (MQ=255)
                                                   gCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgg                                                                                                              <  2:1361678‑M2/139‑15 (MQ=255)
                                                   gCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcga                                                                                                              >  1:1361678‑M2/1‑125 (MQ=255)
                                                     gggTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggc                                                                                                            <  2:602763‑M2/139‑17 (MQ=255)
                                                     gggTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggc                                                                                                            >  1:602763‑M2/1‑123 (MQ=255)
                                                          cTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGta                                                                                                                                                         <  2:1933080/91‑1 (MQ=255)
                                                          cTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGta                                                                                                                                                         >  1:1933080/1‑91 (MQ=255)
                                                           ttAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtggga                                                                                                                  <  1:2738407‑M2/127‑11 (MQ=255)
                                                           ttAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtggga                                                                                                                  >  2:2738407‑M2/1‑117 (MQ=255)
                                                                        gtgGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAgcgc                                                                                                                                                   >  1:610091/1‑83 (MQ=255)
                                                                        gtgGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAgcgc                                                                                                                                                   <  2:610091/83‑1 (MQ=255)
                                                                                 gtTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATacctgtgg                                                                                                                    <  2:3032421‑M2/103‑9 (MQ=255)
                                                                                   tGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACac                                                                                                                          <  2:1873729‑M2/95‑3 (MQ=255)
                                                                                   tGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACac                                                                                                                          >  1:1873729‑M2/1‑93 (MQ=255)
                                                                                      gCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAGGGTTGGCGCTACacctgt                                                                                                                      >  2:970214‑M2/1‑90 (MQ=255)
                                                                                      gCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAGGGTCGTCTCTACacctgt                                                                                                                      <  1:970214‑M2/96‑7 (MQ=255)
                                                                                         tGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCca                                                                                                                                                >  2:1975667/1‑68 (MQ=255)
                                                                                         tGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCca                                                                                                                                                <  1:1975667/68‑1 (MQ=255)
                                                                                          ggCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACAt                                                                                                                                            <  2:2661487/70‑1 (MQ=255)
                                                                                          ggCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACAt                                                                                                                                            >  1:2661487/1‑70 (MQ=255)
                                                                                             aaGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACa                                                                                                                           <  2:2863946‑M2/84‑2 (MQ=255)
                                                                                             aaGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACa                                                                                                                           >  1:2863946‑M2/1‑83 (MQ=255)
                                                                                                gATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTg                                                                                                                                   <  1:1818018/73‑1 (MQ=255)
                                                                                                gATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTg                                                                                                                                   >  2:1818018/1‑73 (MQ=255)
                                                                                                      tggtggTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTgg                                                                                                                                  >  2:2823643/1‑68 (MQ=255)
                                                                                                      tggtggTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTgg                                                                                                                                  <  1:2823643/68‑1 (MQ=255)
                                                                                                                             gcgGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagc                                                                                                                >  1:1652721‑M2/1‑52 (MQ=255)
                                                                                                                             gcgGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagc                                                                                                                <  2:1652721‑M2/64‑13 (MQ=255)
                                                                                                                                      cccGCTGCCAAAGGTATAGCGCCACATTCACGGTTGGCGCTACACCGGTGGGAGCGGGCGTGTCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGAAGGTTTGAGCCTTGCACAAGCa                 >  2:1164742/1‑150 (MQ=255)
                                                                                                                                       ccGCTCCCACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAgc                                               <  2:1633953/119‑1 (MQ=14)
                                                                                                                                       ccGCTCCCACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAgc                                               >  1:1633953/1‑119 (MQ=17)
                                                                                                                                       ccGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACac                                                                                                                          >  2:2154837‑M2/1‑42 (MQ=255)
                                                                                                                                       ccGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACac                                                                                                                          <  1:2154837‑M2/44‑3 (MQ=255)
                                                                                                                                       ccGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGcagtca                                                                                          <  2:2463389/76‑1 (MQ=255)
                                                                                                                                       ccGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGcagtca                                                                                          >  1:2463389/1‑76 (MQ=255)
                                                                                                                                         gCTCCCACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGa              >  1:1768254/1‑150 (MQ=21)
                                                                                                                                         gCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGa              >  2:1928501/1‑150 (MQ=255)
                                                                                                                                           tCCCACAGGTATAGCGCCACATTCAAGGTTGGCGATACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAAc            >  1:3021579/1‑150 (MQ=255)
                                                                                                                                            cccACAGGTATAGCGCCATATTCAAGGTTGGCGCTATacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaagcacccgcttccaggccctcgacc           <  1:251206‑M2/150‑114 (MQ=255)
                                                                                                                                            cccACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACg           >  2:1611398/1‑150 (MQ=255)
                                                                                                                                             ccACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGaa                               >  2:1001835/1‑129 (MQ=18)
                                                                                                                                             ccACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGaa                               <  1:1001835/129‑1 (MQ=18)
                                                                                                                                             ccACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACga          >  2:1999249/1‑150 (MQ=21)
                                                                                                                                             ccACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaac                                                         <  1:3032421‑M2/103‑68 (MQ=255)
                                                                                                                                             ccACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCagcagc                                    >  2:2778965/1‑124 (MQ=255)
                                                                                                                                             ccACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCagcagc                                    <  1:2778965/124‑1 (MQ=255)
                                                                                                                                             ccACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGATTGAAGCCTTGCACCAGCATGAACga          >  1:2949354/1‑150 (MQ=255)
                                                                                                                                              cacaGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACgag         >  2:1417815/1‑150 (MQ=255)
                                                                                                                                              cacaGGTATAGCGCCACATTCAAGGTTGGCGCTACACATGTGGGAGCGGGAGTGCCATGGAAGCAGTCAGTGAGTTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACgag         >  1:376481/1‑150 (MQ=255)
                                                                                                                                               acaGGTGTAGCGCCAACCTTGAATGTGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCtt                          <  1:823247/132‑1 (MQ=21)
                                                                                                                                               acaGGTATAGCGCCACATTCAAGGTTGGCGCTCAgcctggttgagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaagcacccgcttccaggccctcgaccagt        <  1:727970‑M2/150‑117 (MQ=255)
                                                                                                                                               acaGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGTCCTTGGCAGGAATCCACGCGCAACCAGTGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACgaga        >  2:3023969/1‑150 (MQ=255)
                                                                                                                                               acaGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAgc                                               >  1:1837274/1‑111 (MQ=255)
                                                                                                                                               acaGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAgc                                               <  2:1837274/111‑1 (MQ=255)
                                                                                                                                                caGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaagcacccgcttccaggccctcgaccagtt       <  2:1417058‑M2/150‑118 (MQ=255)
                                                                                                                                                 aGGTATAGCGCCACATTCAAGGTTGGCGCTATacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaagcacccgcttccaggccctcgaccagttc      <  2:240285‑M2/150‑119 (MQ=255)
                                                                                                                                                  ggTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAACTTGAAGCCTTGCACCAGCATGGGCGAGATCa     >  2:1712749/1‑150 (MQ=255)
                                                                                                                                                   gTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaagcacccgcttccaggccctcgaccagttcct    <  1:2458933‑M2/150‑121 (MQ=255)
                                                                                                                                                   gTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaagcacacgcttcgaggcgctcgaccagttcct    <  2:1474225‑M2/150‑121 (MQ=255)
                                                                                                                                                   gTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaacc                                                                                  >  1:955352‑M2/1‑30 (MQ=255)
                                                                                                                                                   gTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaacc                                                                                  <  2:955352‑M2/72‑43 (MQ=255)
                                                                                                                                                   gTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCAc    >  2:2691941/1‑150 (MQ=255)
                                                                                                                                                   gTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACAGATcgga   >  1:2334315/1‑147 (MQ=255)
                                                                                                                                                    tataGCGCCACATTCAAGGTTGGCGCTATacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaagcacccgcttccaggccctcgaccagttcctg   <  2:2560327‑M2/150‑122 (MQ=255)
                                                                                                                                                    tataGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCa                    >  2:2724442/1‑133 (MQ=255)
                                                                                                                                                    tataGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCa                    <  1:2724442/133‑1 (MQ=255)
                                                                                                                                                     ataGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgc                                                              <  1:1951157‑M2/90‑63 (MQ=255)
                                                                                                                                                     ataGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgc                                                              >  2:1951157‑M2/1‑28 (MQ=255)
                                                                                                                                                     ataGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccaagcccaaccacctccacagcccccac                                       >  1:1936501‑M2/1‑28 (MQ=255)
                                                                                                                                                     ataGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccaagcccaaccacctccacagcccccac                                       <  2:1936501‑M2/113‑86 (MQ=255)
                                                                                                                                                     ataGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCa  >  1:241963/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                       
CGGTTTCCACAGCTGCTGGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCA  >  NC_002947/337664‑337961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: