| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,741,946 | C→T | 5.0% | E88E (GAG→GAA) | PP_5039 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,741,946 | 0 | C | T | 5.0% | 420.7 / 7.9 | 141 | E88E (GAG→GAA) | PP_5039 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (73/59); new base T (3/4); total (77/64) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.01e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.14e-01 | |||||||||||
Only 100 of 150 total aligned reads displayed.
CGATAACGCTCCACGCACAGGTTCTGCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGC > NC_002947/5741797‑5742095 | aTAACGCTCCACGCACAGGTTCTGCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTc > 1:1132565/1‑150 (MQ=255) cGCTCCACGCACAGGTTCTGCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAg < 2:228740/150‑1 (MQ=255) cTCCACGCACAGGTTCTGCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGGCGCCTTCGAGGgc < 2:1359776/150‑1 (MQ=255) tCCACGCACAGGTTCTGCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGgcg > 2:3003164/1‑150 (MQ=255) aCGCACAGGTTCTGCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGgcgggc > 1:1089681/1‑150 (MQ=255) gCACAGGTTCTGCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCCTCTGCAGGACCTGCATGGCGACCAC‑CTGGGCCCGCCGGTCGCCCTCGCACGCGCgcgg > 2:852433/1‑150 (MQ=255) cacaGGTTCTGCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGGAGGCGCgcggc < 2:2721831/150‑1 (MQ=255) acaGGTTCTGCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCgcggcg > 2:2983591/1‑150 (MQ=255) acaGGTTCTGCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGCGCGCCTTCGAGGGCGAccggcg > 2:1808733/1‑150 (MQ=255) ggTTCTGCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCgtgt < 2:1530133/150‑1 (MQ=255) gTTCTGCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTc > 1:912328/1‑150 (MQ=255) gTTCTGCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTc > 1:2284775/1‑150 (MQ=255) ttCTGCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTcg > 1:341755/1‑150 (MQ=255) cTGCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCgt > 1:133778/1‑144 (MQ=255) cTGCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCgt < 2:133778/144‑1 (MQ=255) gCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGt < 1:1929514/150‑1 (MQ=255) gCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGt < 2:435857/150‑1 (MQ=255) gCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGt > 1:435857/1‑150 (MQ=255) ccAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTa > 2:36325/1‑150 (MQ=255) cAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTAACAGCCCTGCATGTCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAATGCGCGCGGCGTGTCGCGGTAGATCAt > 1:1301342/1‑150 (MQ=255) aGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTTGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAg < 1:405494/123‑1 (MQ=255) aGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATg > 2:982142/1‑150 (MQ=255) gCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGc > 2:2214863/1‑150 (MQ=255) aCTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGt < 1:1586174/150‑1 (MQ=255) ttCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGCCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTgg > 1:204955/1‑150 (MQ=255) gCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGt > 2:2149528/1‑150 (MQ=255) tCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGt > 2:1284870/1‑127 (MQ=255) tCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGt < 1:1284870/127‑1 (MQ=255) ccAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCgt < 1:2607569/118‑1 (MQ=255) ccAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCgt > 2:2607569/1‑118 (MQ=255) ccAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGa < 1:3032142/150‑1 (MQ=255) cAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAg > 1:1584890/1‑150 (MQ=255) gTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCa > 1:2614321/1‑150 (MQ=255) aCCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGACCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCaaa < 1:852433/150‑1 (MQ=255) ccAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCaaaa > 1:2252328/1‑150 (MQ=255) ccAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCAGTAGATCATGCGTGGCAGCTGGTCGAGCaaaa > 1:44304/1‑150 (MQ=255) cagcaCGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATcag < 2:438065/150‑1 (MQ=255) agcaCGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATcagc < 1:1889079/150‑1 (MQ=255) gcaCGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGACACGCCGCGCGCCTTCGAGGGCGACCGGCgtgcccag > 1:918952/1‑107 (MQ=21) gcaCGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGACACGCCGCGCGCCTTCGAGGGCGACCGGCgtgcccag < 2:918952/112‑6 (MQ=21) caCGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTgg > 2:1094012/1‑126 (MQ=255) caCGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATcag > 1:2911117/1‑147 (MQ=255) caCGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATcag < 2:2911117/147‑1 (MQ=255) acGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCccagc > 2:1816727/1‑150 (MQ=255) gcgcTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCccagcca > 1:2243084/1‑150 (MQ=255) gcTGGATCGGCAGCAGCTGGTAGTCCCAGCCCGTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGGAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAAGCAGCAGGCCcagccagc < 2:773891/150‑1 (MQ=255) tCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGt > 1:542891/1‑107 (MQ=255) ggCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGAGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCggg < 1:1345133/150‑1 (MQ=255) gcagcaGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCgggg > 2:2489998/1‑150 (MQ=255) cagcagCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGt < 2:1584890/150‑1 (MQ=255) cagcTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCgcggc > 1:1043847/1‑79 (MQ=255) cagcTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCgcggc < 2:1043847/79‑1 (MQ=255) tGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTtgctgc < 1:2149528/150‑1 (MQ=255) tGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATACTGGGTGGTAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTtgctgc < 1:376930/150‑1 (MQ=255) tGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGAACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTtgctgc < 1:2489998/150‑1 (MQ=255) ggTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTtgctg < 1:2007609/148‑1 (MQ=255) gTAGTCCTAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCa > 1:1874980/1‑150 (MQ=255) gTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATcagca > 2:2471391/1‑119 (MQ=255) gTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATcagca < 1:2471391/119‑1 (MQ=255) gTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCa > 1:291573/1‑150 (MQ=255) tCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCActct > 2:2488698/1‑150 (MQ=255) tCCCAGCCCTTCTGCAGGCCCTGCATGGCG‑CCACGCTGGATGAATGCGCCGGCGCTGTAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCActct < 1:2983591/150‑1 (MQ=255) gccAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCtt > 2:2108427/2‑150 (MQ=255) ccAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATcagcag > 2:268240/1‑114 (MQ=255) ccAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATcagcag < 1:268240/114‑1 (MQ=255) ccAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTc > 1:1509545/1‑150 (MQ=255) ccAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTc > 1:2698118/1‑150 (MQ=255) ccAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGGTTGCTGCCACTCTTc > 1:198304/1‑150 (MQ=255) aGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGa > 1:878184/1‑150 (MQ=255) aGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGa < 2:341755/150‑1 (MQ=255) gCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAg < 2:1458050/150‑1 (MQ=255) ccTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGGGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGGCCACGTATCCTTGCGGGGTTTGCTGCCACTCTTCGAccc > 2:1021666/1‑150 (MQ=255) ccTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTc < 1:505460/94‑1 (MQ=255) ccTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTc > 2:505460/1‑94 (MQ=255) ccTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGcc > 1:2243265/1‑150 (MQ=255) cTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAAt < 2:2005268/102‑1 (MQ=255) aGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCgggg < 2:1171787/121‑1 (MQ=255) aGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCgggg > 1:1171985/1‑121 (MQ=255) aGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCgggg < 2:1171985/121‑1 (MQ=255) cccTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGGTTGCTGCCACTCTTCGAGCCCACCCGCCAgg < 2:1890165/150‑1 (MQ=255) ccTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGGTTGCTGCCACTCTTCGAGCCCACCCGCCAggg > 1:1213966/1‑150 (MQ=255) cTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGc > 2:2076768/1‑150 (MQ=255) gCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGt < 1:36325/150‑1 (MQ=255) aTGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGc < 2:878184/150‑1 (MQ=255) ggCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTc < 1:2076768/150‑1 (MQ=255) gCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCGCCTCTGCGAGCCCACCCGCCAGGGCGTGCTCg < 1:2108427/150‑1 (MQ=255) ac‑cTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAgg > 2:2055246/1‑150 (MQ=255) c‑cTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGt > 2:2582470/1‑150 (MQ=255) ggCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTTTCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGcc < 1:2488698/150‑1 (MQ=255) cACGCCGCGCGCCTTCGAGGGCGACCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCa > 2:879132/1‑106 (MQ=37) gCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACa > 2:2682415/1‑150 (MQ=255) gCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGaagagt > 2:2435248/1‑128 (MQ=255) gCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGaagagt < 1:2435248/133‑6 (MQ=255) gCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATg < 1:208275/150‑1 (MQ=255) gCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTCCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATg > 2:2913618/1‑150 (MQ=255) gCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAACCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTAGCCAAACAGCGCATg > 2:446809/1‑150 (MQ=255) ccTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCagccagcc < 1:1125031/76‑1 (MQ=255) ccTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCagccagcc > 2:1125031/1‑76 (MQ=255) ccTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATggg > 2:2672643/1‑150 (MQ=255) cTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCATCCTCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGc > 1:1740437/1‑150 (MQ=255) | CGATAACGCTCCACGCACAGGTTCTGCCAGTCCAGCACTTCGGCATGCTCCAGTACCAGCAGCACGAACACGCGCTGGATCGGCAGCAGCTGGTAGTCCCAGCCCTTCTGCAGGCCCTGCATGGCGACCAC‑CTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGC > NC_002947/5741797‑5742095 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |