New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1037774 =32 (0.530)13 (0.260) 10/222 3.9 33.6% intergenic (+16/+100) PP_0896/PP_0897 carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
?NC_002947 1037852 = 25 (0.500)intergenic (+94/+22) PP_0896/PP_0897 carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
Rejected: Coverage evenness skew score above cutoff.

TGAGCAGCTGAACCCGGACTGCAGCCAGTGGCTGGTGTGTGAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGG  >  NC_002947/1037626‑1037923
                                                                                                                                                    |                                                                                                                                                     
tgagCAGCTGAACCCGGACTGCAGCCAGTGGCTGGTGTGTGAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCctct                                                                                                                                                      >  1:919359/1‑150 (MQ=255)
     agcTGAACCCGGACTGCAGCCAGTGGCTGGTGTGTGAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTcgcg                                                                                                                                                 <  1:45957/150‑1 (MQ=255)
                        ccAGTGGCTGGTGTGTGAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAAt                                                                                                                              <  1:1370875/150‑1 (MQ=255)
                        ccAGTGGCGGGTGTGGGAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGTCGGAGCAGTTCGAGAGATTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAAt                                                                                                                              >  2:552495/1‑150 (MQ=255)
                          aGTGGCTGGTGTGTGAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGc                                                                                                                            <  2:29842/150‑1 (MQ=255)
                             ggCTGGTGTGTGAGGTAGATTTGGAGGAAGTGCGGCGGTTGAGGCGGGAAGGGCAGGTGTTTACCTGGTGGGACTGGCCGGAGCAGTTCGAGAGATTCCTGTGATGACTGTGGCGGCCTCTTCTCGGGCAAGCCCGCTCCCAAATTCGTa                                                                                                                         <  2:517280/150‑1 (MQ=255)
                                     tgtgAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTg                                                                                                                 >  2:1253990/1‑150 (MQ=255)
                                           gaaGATGTGGGGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTgc                                                                                                           >  2:56445/3‑150 (MQ=255)
                                           gTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTTCCAAATGc                                                                                                                            >  2:1407446/1‑133 (MQ=255)
                                           gTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTTCCAAATGc                                                                                                                            <  1:1407446/133‑1 (MQ=255)
                                           gTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTgc                                                                                                           >  2:1198965/1‑150 (MQ=255)
                                                 ttGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTa                                                                                                     <  1:1400484/150‑1 (MQ=255)
                                                    gaggaAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACgt                                                                                                  >  2:1074264/1‑150 (MQ=255)
                                                      ggaAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACgtgt                                                                                                <  1:1253990/150‑1 (MQ=255)
                                                        aaGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGCATGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTgg                                                                                              <  2:636584/150‑1 (MQ=255)
                                                        aaGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGTCGGAGCAGTTCGAGAGATTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTgg                                                                                              <  1:552495/150‑1 (MQ=255)
                                                        aaGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTgg                                                                                              <  1:1074264/150‑1 (MQ=255)
                                                            gcggcgGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAACAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGtgtg                                                                                               >  2:592834/1‑145 (MQ=255)
                                                            gcggcgGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAACAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGtgtg                                                                                               <  1:592834/145‑1 (MQ=255)
                                                              ggcggGTGGGGCGGGAAGGGCAGGTGTTTCGCGAGCTTGACTGGCCGGAGCAGTGGGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAGGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCgg                                                                                        <  2:118382/150‑1 (MQ=255)
                                                              ggcggGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCgg                                                                                        <  1:1198965/150‑1 (MQ=255)
                                                               gcggGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCggg                                                                                       <  2:619766/150‑1 (MQ=255)
                                                               gcggGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCggg                                                                                       <  2:919359/150‑1 (MQ=255)
                                                                         cGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAg                                                                                           >  2:538307/1‑136 (MQ=255)
                                                                         cGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAg                                                                                           <  1:538307/136‑1 (MQ=255)
                                                                             aaGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAagc                                                                         >  2:92111/1‑150 (MQ=255)
                                                                                                    gACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGc                                                                                                                            <  1:660184/76‑1 (MQ=255)
                                                                                                    gACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGc                                                                                                                            >  2:660184/1‑76 (MQ=255)
                                                                                                        ggCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTgcgc                                                                                                         <  2:403063/91‑1 (MQ=255)
                                                                                                        ggCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTgcgc                                                                                                         >  1:403063/1‑91 (MQ=255)
                                                                                                         gCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCGGGGGCCGCAGTTACATCAGGTTacttc                                             >  1:1695/1‑150 (MQ=255)
                                                                                                                                           tgGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGctct           <  1:56445/150‑1 (MQ=255)
                                                                                                                                                    ctTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCAcaggg  >  1:142256/1‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
TGAGCAGCTGAACCCGGACTGCAGCCAGTGGCTGGTGTGTGAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGG  >  NC_002947/1037626‑1037923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.