New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5759491	9 (0.530)	4 (0.310)	4/214	1.3	32.1%	intergenic (+44/+112)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	= 5759519	10 (0.770)					intergenic (+72/+84)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB

TGCTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5759314‑5759491 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcctcttcgcgggtaaacccgctcctacAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCACAGGCAACACATCAGCTCCCGGCAAACCCGTTCTGCCGCCACGCCTCATACACCGTCACCGCCACCGTATTGGACAGGT  <  NC_002947/5759519‑5759380                                                                                                                                                                                                                                                                                                                                TGCTGGACAGCCTGCCGGCCGAGCATCGCCTGTGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGG                                                                                                                                                                          <  1:178812/150‑1   CTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGC                                                                                                                                                                        <  1:204851/150‑1                                                                                                                 GAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGC                                                                                                          <  1:267752/102‑1                                                                                                                 GAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGC                                                                                                          >  2:267752/1‑102                                                                                                                  AACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGG                                                                                                       >  1:219907/1‑104                                                                                                                  AACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGG                                                                                                       <  2:219907/104‑1                                                                                                                                                                         CCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCACAGGCAACACATCAGCTCCCGGCAAACCCGTTCTGCCGCCACGCCTCATACACCGTCACCGCCACCGTATTGGACAGGT  >  1:390443/1‑150                                                                                                                                                                         CCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCACAGGCAACACATCAGCTCCCGGCAAACCCGTTCTGCCGCCACGCCTCATACACCGT                         >  1:156152/1‑127                                                                                                                                                                         CCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCACAGGCAACACATCAGCTCCCGGCAAACCCGTTCTGCCGCCACGCCTCATACACCGT                         <  2:156152/127‑1                                                                                                                                                                                                                                                                                                                                TGCTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5759314‑5759491 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcctcttcgcgggtaaacccgctcctacAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCACAGGCAACACATCAGCTCCCGGCAAACCCGTTCTGCCGCCACGCCTCATACACCGTCACCGCCACCGTATTGGACAGGT  <  NC_002947/5759519‑5759380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.