New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5743392 =	18 (1.060)	4 (0.260)	4/252	1.6	20.9%	intergenic (‑169/+78)	fbp/glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
	?	NC_002947	5743446 =	14 (0.910)					intergenic (‑223/+24)	fbp/glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase

GGGGGGATGAAAAACCCACGCAGTTTACAGGGAGAGTGACGGGCTAGCGAGTGATGAGACTCGCCACGGCTCTCAGACGGCACAATAGGTCGGTAGTTCAGCCTTCGCCAGGCCGGTGGTCTGGTTGTGTGTCCATTCGCGGGCGCGCTCGCTCCCACAGGTACAGCGCAAGCCTTGAAGCTTGCGAGACACCTGTGGGAGCGGGCGTGCCCGCGAACGGCCTCACCTCAATCCAATGCCTTCCAGATCTCGGTGGCATATTCGCGAATGGTGCGGTCCGA  >  NC_002947/5743243‑5743523                                                                                                                                                      |                                                                                                                                    ggggggATGAAAAACCCACGCAGTTTACAGGGAGAGTGACGGGCTAGCGAGTGATGAGACTCGCCACGGCTCTCAGACGGCACAATAGGTCGGTAGTTCAGCCTTCGCCAGGCCGGTGGTCTGGTTGTGTGTCCATTCGCGGGCGcgctc                                                                                                                                     <  1:370369/150‑1 (MQ=255)        tGAAAAACCCACGCAGTTTACAGGGAGAGTGACGGGCTAGCGAGCACTCAGTCTCGCCACGGCTCTCAGACGGCACAATAGGTCGGTAGTTCCGCCTTCGCCAGGCCGGTGGTCTGGTTGTGTGTCCATTCGCGGGCGCGCTCGCTCCca                                                                                                                              >  1:180389/1‑150 (MQ=255)        gcacacaccgcaggagtggtggcgcaaggcggtattgaacacggcacggatgggctggttctcgtcggaccgcaccattcgcgaatatgccaccgagatctggaaggcattggattgaggtgaggccgttcgcgggcacgccCGCTCCca                                                                                                                              <  1:277144‑M1/8‑1 (MQ=255)           cacaccgcaggagtggtggcgcaaggcggtattgaacacggcacggatgggctggttctcgtcggaccgcaccattcgcgaatatgccaccgagatctggaaggcattggattgaggtgaggccgttcgcgggcacgccCGCTCCCACAg                                                                                                                           >  2:375671‑M1/140‑150 (MQ=255)             caccgcaggagtggtggcgcaaggcggtattgaacacggcacggatgggctggttctcgtcggaccgcaccattcgcgaatatgccaccgagatctggaaggcattggattgaggtgaggccgttcgcgggcacgccCGCTCCCACAGGt                                                                                                                         >  2:383145‑M1/138‑150 (MQ=255)                  aCGCAGTTTACAGGGAGAGTGACGGGCTAGCGAGTGATGAGACTCGCCACGGCTCTCAGACGGCACAATAGGTCGGTAGTTCAGCCTTCTCCAGGCCGGTTGTCTGGTTGTGTGTCCATTCGCGGGCGCGCTCGCTCCCACAGGTACAgc                                                                                                                    <  1:134082/150‑1 (MQ=255)                                       gtattgaacacggcacggatgggctggttctcgtcggaccgcaccattcgcgaatatgccaccgagatctggaaggcattggattgaggtgaggccgttcgcgggcacgccCGCTCCCACAGGt                                                                                                                         <  1:28524‑M1/13‑1 (MQ=255)                                       gtattgaacacggcacggatgggctggttctcgtcggaccgcaccattcgcgaatatgccaccgagatctggaaggcattggattgaggtgaggccgttcgcgggcacgccCGCTCCCACAGGt                                                                                                                         >  2:28524‑M1/112‑124 (MQ=255)                                         gggCTAGCGAGTGATGAGACTCGCCACGGCTCTCAGACGGCACAATAGGTCGGTAGTTCAGCCTTCGCCAGGCCGGTGGTCTGGTTGTGTGTCCATTCGCGGGCGCGCTCGCTCCCACAGGTACAGCGCAAGCCTTGAAGCTTGCGAGac                                                                                             >  1:193198/1‑150 (MQ=255)                                         gggCTAGCGAGTGATGAGACTCGCCACGGCTCTCAGACGGCACAATAGGTCGGTAGTTCAGCCTTCGCCAGGCCGGTGGTCTGGTTGTGTGTCCATTCGCGGGCGCGCTCGCTCCCACAGGTACAGCGCAAGCCTTGAAGCTTGCGAGac                                                                                             <  1:43859/150‑1 (MQ=255)                                             tAGCGAGTGATGAGACTAGCGAAGGACCGCAGACTGGATAATATGTCCGTAGTTCAGCCTTCGCCAGGCCGGTGGTCTGGTTGTGTGTCCATTCGCGGGCGCGCTCGCTCCCACAGGTACAGCGCAAGCCTTGAAGCTTGCGAGCCACCt                                                                                         <  2:354368/150‑1 (MQ=255)                                                     gatgaGACTCGCCACGGCTCTCAGACGGCACAATAGGTCGGTAGTTCAGCCTTCGCCAGGCCGGTGGTCTGGTTGTGTGTCCATTCGCGGGCGCGCTCGCTCCCACAGGTACAGCGCAAGCCTTGAAGCTTGCGAGACACCTGTGGGAGc                                                                                 >  1:326151/1‑150 (MQ=255)                                                       tgaGACTCGCCACGGCTCTCAGACGGCACAATAGGTCGGTAGTTCAGCCTTCGCCAGGCCGGTGGTCTGGTTGTGTGTCCATTCGCGGGCGCGCTCGCTCCCACAGGTACAGCGCAAGCCTTGAAGCTTGCGAGACACCTGTGGGAGCgg                                                                               <  1:378339/150‑1 (MQ=255)                                                                ccACGGCTCTCAGACGGCACAATAGGTCGGTAGTTCAGCCTTCGCCAGGCCGGTGGTCTGGTTGTGTGTCCATTCGCGGGCGCGCTCGCTCCCACAGGTACAGCGCAAGCCTTGAAGCTTGCGAGACACCTGTGGGAGCGGGCGTGCCcg                                                                      >  2:301771/1‑150 (MQ=255)                                                                      cgctcAGACGGCACAATAGGTCGGTAGTTCAGCCTTCGCCAGGCCGGTGGTCGGGTTGTGTGTCCATTCGCGGGCGCGCTCGCTCCAGCCGGTACAGCGCAGGGATGTTAGCTTGCGAGACACCTGTGGGAGCGGGCGTGCCCGCGAACg                                                                <  2:120049/148‑1 (MQ=255)                                                                                caccattcgcgaatatgccaccgagatctggaaggcattggattgaggtgaggccgttcgcgggcacgccCGCTCCCACAGGTACAGCGCAAGCCTTGAAGCTTGCGAGACACCtg                                                                                        <  1:303153‑M1/46‑1 (MQ=255)                                                                                caccattcgcgaatatgccaccgagatctggaaggcattggattgaggtgaggccgttcgcgggcacgccCGCTCCCACAGGTACAGCGCAAGCCTTGAAGCTTGCGAGACACCtg                                                                                        >  2:303153‑M1/71‑116 (MQ=255)                                                                                  acaATAGGTCTGTAGTTCAGCCTTCGCCAGGCCGGTGGTCTGGTTGTGTGTCCATTCGCGGGCGCGCTCGCTCCCACAGGTACAGCGCAAGCCTTGAAGCTTGCGAGACACCTGTGGGAGCGGGCGTGCCCGCGAACGGCCTCACCTCaa                                                    <  2:193198/150‑1 (MQ=255)                                                                                   cattcgcgaatatgccaccgagatctggaaggcattggattgaggtgaggccgttcgcgggcacgccCGCTCCCACAGGTGTCGCGCAAGCCTTGAAGCTTGCga                                                                                                >  1:353873‑M1/68‑105 (MQ=255)                                                                                   cattcgcgaatatgccaccgagatctggaaggcattggattgaggtgaggccgttcgcgggcacgccCGCTCCCACAGGTGTCGCGCAAGCCTTGAAGCTTGCga                                                                                                <  2:353873‑M1/38‑1 (MQ=255)                                                                                             gTAGTTCAGCCTTCGCCAGGCCGGTGGTCTGGTTGTGTGTCCATTCGCGGGCGCGCTCGCTCCCACAGGTACAGCGCAAGCCTTGAAGCTTGCGAGACACCTGTGGGAGCGGGCGTGCCCGCGAACGGCCTCACCTCAATCCAATGCCtt                                         >  2:381654/1‑150 (MQ=255)                                                                                             gTAGTTCAGCCTTCGCCAGGCCGGTGGTCTGGTTGTGTGTCCATTCGCGGGCGCGCTCGCTCCCACAGGTACAGCGCAAGCCTTGAAGCTTGCGAGACACCGGTGGGAGCGGGCGTGCCCGCGAACGGCCTCACCTCAATCCAATGCCtt                                         >  2:91311/1‑150 (MQ=255)                                                                                                 ttCAGCCTTCGCCAGGCCGGTGGTCTGGTTGTGTGTCCATTCGCGGGCGCGCTCGCTCCCACAGGTACAGCGCAAGCCTTGAAGCTTGCGAGACACCTGTGGGAGCGGGCGTGCCCGCGAACGGCCTCACCTCAATCCAATGCCTTCCAg                                     >  2:100599/1‑150 (MQ=255)                                                                                                            ccAGGCCGGTGGTCTGGTTGTGTGTCCATTCGCGGGCGCGCTCGCTCCCACAGGTACAGCGCAAGCCTTGAAGCTTGCGAGACACCTGTGGGAGCGGGCGTGCCCGCGAACGGCCTCACCTCAATCCAATGCCTTCCAGATCTCGGTGGc                          <  1:100599/150‑1 (MQ=255)                                                                                                                  gggtgttCTGGTTGTCTGTCCAGTCCCGTGCGCGCTCGCTCCCACTGGTACAGCGCAAGCCTTGAACCTTGCGAGACACCTGTGGGAGCTGGCGTGCCCGCGAACGGCCTCACCTCAATCCAATGCCTTCCAGATCTCGGTGGCATATTc                    <  2:403914/149‑1 (MQ=255)                                                                                                                    gtggtCTGGTTGTGTGTCCATTCGCGGGCGCGCTCGCTCCCACAGGTACAGCGCAAGCCTTGAAGCTTGCGAGACACCTGTGGGAGCGGGCGTGCCCGCGAACGGCCTCACCTCAATCCAATGCCTTCCAGATCTCGGTGGCATATTcgc                  <  1:192639/150‑1 (MQ=255)                                                                                                                                    tCCATTCGCGGGCGCGCTCGCTCCCACAGGTACAGCGCAAGCCTTGAAGCTTGCGAGACACCTGTGGGAGCGGGCGTGCCCGCGAACGGCCTCACCTCAATCCAATGCCTTCCAGATCTCGGTGGCATATTCGCGAATGGTGCGGTCcga  >  1:108547/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                    GGGGGGATGAAAAACCCACGCAGTTTACAGGGAGAGTGACGGGCTAGCGAGTGATGAGACTCGCCACGGCTCTCAGACGGCACAATAGGTCGGTAGTTCAGCCTTCGCCAGGCCGGTGGTCTGGTTGTGTGTCCATTCGCGGGCGCGCTCGCTCCCACAGGTACAGCGCAAGCCTTGAAGCTTGCGAGACACCTGTGGGAGCGGGCGTGCCCGCGAACGGCCTCACCTCAATCCAATGCCTTCCAGATCTCGGTGGCATATTCGCGAATGGTGCGGTCCGA  >  NC_002947/5743243‑5743523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.