New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	741473 =	NA (NA)	4 (0.240)	4/270	1.7	22.7%	intergenic (+70/‑430)	PP_t12/PP_0635	tRNA‑Thr/group II intron‑encoding maturase
	?	NC_002947	2069206 =	14 (0.830)					intergenic (+10/‑464)	PP_t19/PP_1846	tRNA‑Ser/group II intron‑encoding maturase

GTGTAGCTCAGTCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGTTGGTCTATGGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGC  >  NC_002947/741332‑741615                                                                                                                                               |                                                                                                                                               gtgtAGCTCAGTCGGTAGGGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGTTGGTCTATGGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTgcgc                                                                                                                                        >  1:239573/1‑150 (MQ=255)               gTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGTTGGTCTATGGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGt                                                                                                                          >  1:259653/1‑150 (MQ=255)                tAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGTTGGTCTATGGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGtt                                                                                                                         >  2:331373/1‑150 (MQ=255)                    gcggcttaCTCGTAACGGGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGTTGGTCTATGGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTgcgc                                                                                                                     <  2:114253/143‑1 (MQ=255)                    gcagcGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGTTGGTCTATGGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTgcgc                                                                                                                     <  2:381705/150‑1 (MQ=255)                                 aaCGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGTTGGTCTATGGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAAccc                                                                                                        <  1:219883/150‑1 (MQ=255)                                                      aTTCCTGTCTCCGGCACCAGAATCAGTTGGTCTATGGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGt                                                                                   >  2:172248/1‑150 (MQ=255)                                                        tCCTGTCTCCGGCACCAGAATCAGTTGGTCTATGGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAAACCGCTTGGTTGTGGTGGCCAAGTgg                                                                                 >  1:291576/1‑150 (MQ=255)                                                        cccTGTAGCCGGCACCAGAATCAGTTAGTCTCTGGACATTAGTTGAGACGTGTCACCAATAGAAGCCC‑CCATGTCGCCGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTgg                                                                                 <  1:197244/149‑1 (MQ=14)                                                          cTGTCTCCGGCACCAGAATCAGTTGGTCTATGGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGt                                                                               >  2:32505/1‑150 (MQ=255)                                                             tctcCGGCACCAGAATCAGTTGGTCTATCGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGAc                                                                            >  1:44094/1‑150 (MQ=255)                                                                  ggCACCAGAATCAGTTGGTCTATGGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGa                                                                       <  2:112360/150‑1 (MQ=255)                                                                   gCACCAGAATCAGTTGGTCTATGGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAg                                                                      <  1:159493/150‑1 (MQ=255)                                                                      ccAGAATCAGTTGGTCTATGGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTg                                                                   >  2:365859/1‑150 (MQ=255)                                                                                 tGGTCTATGGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTa                                                        <  1:32505/150‑1 (MQ=255)                                                                                 tGGTCTATGGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTa                                                        <  2:259653/150‑1 (MQ=255)                                                                                   gTCTATGGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCGTGGTTGTGGGGGCCAAGTGGGGGACTTGGAGGTGAAAGTCCTCTaca                                                      >  2:151061/1‑150 (MQ=255)                                                                                    tCTATGGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTacac                                                     >  1:382608/1‑150 (MQ=255)                                                                                               ttCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTGAGCGCAACCCGCTAGGCTGTGCAGGCCTAGTGTGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAgg                                          >  1:93939/1‑150 (MQ=18)                                                                                                    gCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTg                                                                         >  2:223354/1‑114 (MQ=255)                                                                                                    gCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTg                                                                         <  1:223354/114‑1 (MQ=255)                                                                                                    gCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACGCACCCGGCAAGGGGAAg                                     <  2:104980/150‑1 (MQ=255)                                                                                                              aCCAATAGAAGCCCGCGTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCgg                           >  1:41100/1‑150 (MQ=255)                                                                                                                cAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAg                         >  2:60181/1‑150 (MQ=255)                                                                                                                           cGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTc              >  1:196345/1‑150 (MQ=38)                                                                                                                                tgt‑gCGGGCTTTTTTGTGTGCGCCAGGCATGGCGTGCGGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACTCACCCGTCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCggg         <  2:240834/150‑1 (MQ=11)                                                                                                                                        gCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACcgc  >  1:35067/1‑150 (MQ=31)                                                                                                                                               |                                                                                                                                               GTGTAGCTCAGTCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCCGGCACCAGAATCAGTTGGTCTATGGCGATTTCTCGCTACCTGGCACCAATAGAAGCCCGCCTTGT‑GCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGC  >  NC_002947/741332‑741615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.